Showing : miRNA • reset
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.7 years ago by ★ 4.3k • written 11.7 years ago by ▴ 330
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11.7 years ago Kishor Tappita ▴ 340
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Bioconductor 2.14 is released
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updated 11.7 years ago by 53k • written 11.7 years ago by ★ 13k
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About ChIPpeakAnno output = "shortestDistance"
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
11.7 years ago Julie Zhu ★ 4.3k
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2
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1.5k
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About ChIPpeakAnno
miRNA ChIPpeakAnno miRNA ChIPpeakAnno
updated 11.8 years ago by ★ 4.3k • written 11.8 years ago by ▴ 330
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4
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11.9 years ago Coonen Maarten TGX ▴ 30
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11.9 years ago Isaac Neuhaus ▴ 360
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3
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2.5k
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how to extract probes for a probeset from PdInfo database?
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updated 11.9 years ago by ★ 4.3k • written 11.9 years ago by ★ 4.1k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
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12.0 years ago James W. MacDonald 68k
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4
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
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updated 12.0 years ago by 68k • written 12.0 years ago by ★ 13k
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EximiR - Limma - miRCURY LNA - Exiqon
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12.0 years ago Paolo Kunderfranco ▴ 350
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RmiR and RmiR.Hs.miRNA
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12.0 years ago Thomas Hampton ▴ 750
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Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
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updated 12.2 years ago by ▴ 190 • written 12.2 years ago by 68k
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2
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1.1k
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Coercing matrix into expression set, for normalization of only subsets of miRNAs (affy miRNA3.0)
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updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 30
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Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
12.2 years ago Dan Tenenbaum ★ 8.2k
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922
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Fwd: Regarding miRNA analysis
miRNA Microarray miRNA Microarray
12.2 years ago deepika lakhwani ▴ 170
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Regarding miRNA analysis
miRNA Microarray miRNA Microarray
12.2 years ago deepika lakhwani ▴ 170
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Unusual results with DESeq ?
miRNA Cancer DESeq miRNA Cancer DESeq
updated 12.3 years ago by ★ 3.8k • written 12.3 years ago by ▴ 40
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mirDeep2 edgeR analysis
Sequencing miRNA microRNA Sequencing miRNA microRNA
updated 12.4 years ago by ★ 7.9k • written 12.4 years ago by ▴ 10
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927
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miRNA prediction against a gene list
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12.4 years ago Martin Leonardo ▴ 20
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1
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1.7k
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Using gcrma with \"Affymetrix GeneChip miRNA v1.0\" data
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updated 12.5 years ago by 21k • written 12.5 years ago by ★ 13k
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1
reply
735
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human miRNA predicted/validated targets
miRNA miRNA
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
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973
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edgeR asimmetry in miRNA experiment
miRNA Cancer edgeR miRNA Cancer edgeR
12.7 years ago Gordon Smyth 53k
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identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
12.7 years ago Fiona ▴ 70
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Bioconductor Digest, Vol 121, Issue 29
miRNA Annotation Normalization Visualization Clustering Infrastructure Cancer BSgenome vsn
12.8 years ago Matthew Thornton ▴ 390
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4
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identifying drosophila miRNA targets
miRNA affy microRNA miRNA affy microRNA
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 70
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4
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1.5k
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miRNA analysis advice
miRNA Microarray microRNA miRNA Microarray microRNA
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 70
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1
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1.3k
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significance of correlation genes/miRNAs expression
miRNA Microarray miRNA Microarray
updated 13.0 years ago by ★ 1.3k • written 13.0 years ago by ▴ 200
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1
reply
773
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RankAggreg package
miRNA miRNA
updated 13.0 years ago by ★ 8.2k • written 13.0 years ago by ★ 13k
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862
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OpenArray Input Difficulties - Feature Number Errors, Sample Classification
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13.1 years ago Guest User ★ 13k
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2
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How to design matrix on edgeR to study genotype x environmental interaction
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13.1 years ago Gordon Smyth 53k
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How to design matrix on edgeR to study genotype x environmental interaction
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13.1 years ago Danie ▴ 40
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8
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
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updated 13.1 years ago by 68k • written 13.1 years ago by ▴ 290
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1.0k
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CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
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updated 13.2 years ago by ★ 4.3k • written 13.2 years ago by ▴ 30
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998
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DESeq with 3 sample types
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13.2 years ago Sole Acha, Xavi ▴ 110
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3.6k
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Bioconductor 2.11 is released
BiocViews SNP Transcription Sequencing miRNA Microbiome Microarray qPCR Genetics Coverage
13.2 years ago Dan Tenenbaum ★ 8.2k
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1.5k
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PLGEM on metabolomic data?
miRNA Metabolomics Proteomics Normalization plgem miRNA Metabolomics Proteomics plgem
13.2 years ago Norman Pavelka ▴ 140
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2.3k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 10
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2
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1.6k
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Error of GTF Annotation in easyRNASeq
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13.3 years ago delhomme@embl.de ★ 1.2k
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import miRNA data
miRNA miRNA
13.3 years ago Guest User ★ 13k
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3
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1.6k
views
RE ChIPPEAKANNO
miRNA Genetics ChIPpeakAnno miRNA Genetics ChIPpeakAnno
13.3 years ago Julie Zhu ★ 4.3k
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ChIPpeakAnno to find peaks nearest to miRNA
miRNA Annotation GO BSgenome biomaRt BSgenome ChIPpeakAnno miRNA Annotation GO BSgenome
13.4 years ago Julie Zhu ★ 4.3k
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Post-Doc - Milan: miRNAs and non-coding RNAs identification from RNAseq data
Sequencing RNASeq miRNA Cancer Sequencing RNASeq miRNA Cancer
13.4 years ago mattia pelizzola ▴ 200
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2.3k
views
ChIPpeakAnno to find peaks nearest to miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
updated 13.4 years ago by ★ 4.3k • written 13.4 years ago by ▴ 350
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1.1k
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ChIPpeakAnno - Annotation of miRNA
miRNA GO BSgenome BSgenome ChIPpeakAnno miRNA GO BSgenome BSgenome ChIPpeakAnno
13.4 years ago Paolo Kunderfranco ▴ 350
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1.2k
views
GOstats adding custom annotations
Transcription miRNA GO Transcription miRNA GO
13.4 years ago sudeep s ▴ 60
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2
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1.3k
views
CDF for GeneChip miRNA 2 array - Is there a miRNA 3 CDF?
miRNA Annotation cdf miRNA Annotation cdf
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 270
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votes
1
reply
907
views
Very Different group sizes in DE of two conditions
miRNA Cancer edgeR DESeq miRNA Cancer edgeR DESeq
updated 13.5 years ago by 53k • written 13.5 years ago by ★ 13k
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1
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1.6k
views
AnnotationDbi: NewSchema vignette error
BiocViews miRNA Annotation Cancer Organism biocViews AnnotationDbi BiocViews BiocViews
updated 13.5 years ago by ★ 7.2k • written 13.5 years ago by ▴ 910
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