Showing : michael love • reset
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DESeq2 time course with two genotypes
deseq2 timecourse michael love multiple time points
6.2 years ago cp1015 • 0
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DESeq2 Design Formula
DESeq2 michael love
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 10
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DESeq2 PCA plotting
deseq2 michael love
updated 7.0 years ago by 43k • written 7.0 years ago by • 0
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Need help with DESeq2's contrast feature
deseq2 michael love
updated 7.3 years ago by 43k • written 7.3 years ago by ▴ 10
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DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2 timecourse multiple time points mlr michael love
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
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Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love Salmon tximport tx2gene
updated 7.8 years ago by 43k • written 7.8 years ago by ▴ 30
6 results • Page 1 of 1
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Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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