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michael love
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DESeq2 time course with two genotypes
deseq2
timecourse
michael love
multiple time points
6.1 years ago
cp1015
• 0
0
votes
4
replies
1.1k
views
DESeq2 Design Formula
DESeq2
michael love
updated 6.9 years ago by
Michael Love
43k • written 6.9 years ago by
gkuffel
▴ 10
0
votes
1
reply
1.6k
views
DESeq2 PCA plotting
deseq2
michael love
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
sam.far.7
• 0
1
vote
11
replies
2.3k
views
Need help with DESeq2's contrast feature
deseq2
michael love
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
Ashu
▴ 10
2
votes
3
replies
2.1k
views
DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2
timecourse
multiple time points
mlr
michael love
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
ap874
• 0
5
votes
10
replies
14k
views
Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love
Salmon
tximport
tx2gene
updated 7.7 years ago by
Michael Love
43k • written 7.7 years ago by
pvd2107
▴ 30
6 results • Page
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Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
Comment: Co-occurrence Network Analysis between Algae and Bacteria
by
Stefano Mangiola
▴ 40
Just a placeholder, that we are extending `sccomp` to co-occurrence analyses. Yours could be a good use-case to test first. We will be in t…
Answer: DESeq2 design for haplotype MPRA
by
aimesd808
• 0
I appreciate you telling me about this. Now it's crystal plain to me. Publish this: https://support.bioconductor.org/p/9162649/ [fnf][1] …
Answer: Extract snp information from genomic regions with biomaRt -> "oaries_snp"
by
Kevin Blighe
★ 4.0k
My sincere apologies that my colleagues had ignored your question. The error occurs because the "chromosomal_region" filter is not valid…
Votes
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Comment: Error installing Seqinfo
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