Showing : michael love • reset
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DESeq2 time course with two genotypes
deseq2 timecourse michael love multiple time points
6.3 years ago cp1015 • 0
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4
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DESeq2 Design Formula
DESeq2 michael love
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 10
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1.6k
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DESeq2 PCA plotting
deseq2 michael love
updated 7.1 years ago by 43k • written 7.1 years ago by • 0
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11
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Need help with DESeq2's contrast feature
deseq2 michael love
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 10
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3
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DESeq2 for time series using time as continuous and looking at effect of time on DE
deseq2 timecourse multiple time points mlr michael love
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
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Constructing tx2gene for Salmon txImport Quantification using Gencode Mouse Transcript Annotation
Michael Love Salmon tximport tx2gene
updated 7.9 years ago by 43k • written 7.9 years ago by ▴ 30
6 results • Page 1 of 1
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Answer: How to do differential expresion across time serise with edgeR? by Gordon Smyth 53k
One obvious issue is that you are conducting an old-style edgeR v2 LRT test instead of using the newer edgeR v4 QL pipeline designed to dea…
Answer: ATACseq rudimentary questions by Kevin Blighe ★ 4.0k
For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment? by Gordon Smyth 53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package by TikTsokaasocissalpc • 0
Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Votes
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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