Showing : mirna • reset
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miRNA exiqon panels and HTqPCR
miRNA qPCR PROcess HTqPCR miRNA qPCR PROcess HTqPCR
13.6 years ago Heidi Dvinge ★ 2.0k
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852
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Calculate the relation between mRNA and miRNA
miRNA miRNA
13.6 years ago Gordon Smyth 53k
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2
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1.3k
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[Limma] Calculate the relation between mRNA and miRNA
miRNA miRNA
updated 13.6 years ago by ▴ 130 • written 13.6 years ago by ▴ 210
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BioC package for miRNA target scanning (or displaying results from databases)
miRNA RmiR miRNA RmiR
13.6 years ago James F.Reid ▴ 10
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761
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BioC package for miRNA target scanning (or displaying results from databases)
miRNA miRNA
13.6 years ago Karthik K N ▴ 200
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1
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1.9k
views
Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
13.7 years ago Thomas Maurel ▴ 800
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1
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1.4k
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miRNA and other small RNAs
miRNA Alignment Annotation PROcess miRNA Alignment Annotation PROcess
updated 13.7 years ago by ▴ 330 • written 13.7 years ago by ▴ 70
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2
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1.3k
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FW: miRNA annotation
miRNA Annotation GO Cancer miRNA Annotation GO Cancer
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 70
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2
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1.3k
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Re-send directly to BioC on miRNA annoation
miRNA Annotation Cancer miRNA Annotation Cancer
updated 13.7 years ago by ★ 6.8k • written 13.7 years ago by ▴ 70
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1.1k
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Trouble using Agi4x44tPreProcess to anaylise old files
miRNA limma Agi4x44PreProcess miRNA limma Agi4x44PreProcess
13.8 years ago matthew vitalone ▴ 30
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1
reply
1.2k
views
DESeq estimateDispersion options for lower depth miRNA-seq
Sequencing miRNA DESeq Sequencing miRNA DESeq
updated 13.8 years ago by ★ 13k • written 13.8 years ago by ▴ 50
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5
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6.6k
views
extracting sequence from a genome
miRNA microRNA miRNA microRNA
updated 13.9 years ago by ★ 4.2k • written 13.9 years ago by ▴ 930
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8
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2.4k
views
how to get pig genome and for miRNA target scan
miRNA miRNA
13.9 years ago wang peter ★ 2.0k
0
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1
reply
936
views
question from any of TopGO, gage, sigpathway, GSVA, GOstat users
miRNA Pathways miRNA Pathways
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 290
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2
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7.2k
views
gplots Heatmap
SNP Transcription Sequencing RNASeq miRNA Microarray Annotation Normalization GO Cancer
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
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0
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1.3k
views
miRNA array normalization - RMA vs Genespring comparison
miRNA Normalization GeneSpring miRNA Normalization GeneSpring
14.0 years ago Andrea Grilli ▴ 240
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votes
6
replies
3.0k
views
Error when using the nsFilter command in the genefilter package
miRNA Annotation microRNA BiocInstaller miRNA Annotation microRNA BiocInstaller
14.1 years ago Peter Davidsen ▴ 210
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0
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1.5k
views
Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
14.2 years ago Dan Tenenbaum ★ 8.2k
0
votes
1
reply
862
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annotation db for miRNA_2 Array
miRNA Annotation miRNA Annotation
14.2 years ago Marc Carlson ★ 7.2k
0
votes
1
reply
921
views
extending XString to facilitate miRNA editing
miRNA miRNA
updated 14.3 years ago by ★ 11k • written 14.3 years ago by ▴ 70
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1
reply
717
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annotation file and expression set genechip miRNA 2 array
miRNA Annotation GO miRNA Annotation GO
updated 14.3 years ago by 21k • written 14.3 years ago by ★ 13k
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1
reply
957
views
miRNA 2.0 Array, Annotation Files how to use it after rma and readaffy
miRNA Annotation affy miRNA Annotation affy
updated 14.3 years ago by 21k • written 14.3 years ago by ★ 13k
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3
replies
1.4k
views
Manual creation of Affybatch object to study highthrouput qPCR experiments.
miRNA qPCR affy miRNA qPCR affy
updated 14.3 years ago by ▴ 300 • written 14.3 years ago by ★ 13k
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1
reply
1.2k
views
\'mirna20probe
miRNA affy gcrma miRNA affy gcrma
updated 14.3 years ago by 68k • written 14.3 years ago by ★ 13k
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0
replies
1.1k
views
annotation dbi for miRNA 2.0 Array
miRNA Annotation miRNA Annotation
14.3 years ago Guest User ★ 13k
0
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1
reply
1.2k
views
CDF for GeneChip miRNA 2 array
miRNA cdf miRNA cdf
updated 14.3 years ago by ★ 4.1k • written 14.3 years ago by ★ 13k
6
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11
replies
3.4k
views
edgeR on microRNA data
microRNA edgeR miRNA
14.3 years ago • updated 4.6 years ago Gordon Smyth 53k
0
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3
replies
1.3k
views
ask for your help about some questions of using edgeR
miRNA edgeR miRNA edgeR
14.3 years ago Zhenling Peng ▴ 30
0
votes
1
reply
1.5k
views
loading AB OpenArray qPCR data in HTqPCR
miRNA microRNA HTqPCR miRNA microRNA HTqPCR
updated 14.4 years ago by ★ 2.0k • written 14.4 years ago by ★ 4.1k
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4
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1.6k
views
Plot signal distribution in miRNA arrays
miRNA miRNA
updated 14.5 years ago by ▴ 350 • written 14.5 years ago by ▴ 240
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0
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1.2k
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Limma - batch issues
miRNA Microarray limma PROcess AgiMicroRna miRNA Microarray limma PROcess AgiMicroRna
14.5 years ago Segal, Corrinne ▴ 40
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1
reply
1.2k
views
mirna20.db
miRNA Annotation annotate miRNA Annotation annotate
updated 14.6 years ago by ▴ 190 • written 14.6 years ago by ▴ 30
0
votes
1
reply
1.5k
views
siggenes parameters
miRNA siggenes miRNA siggenes
updated 14.6 years ago by ▴ 900 • written 14.6 years ago by ★ 1.5k
0
votes
1
reply
1.1k
views
about HTqPCR
miRNA Normalization GO HTqPCR miRNA Normalization GO HTqPCR
14.6 years ago Heidi Dvinge ★ 2.0k
0
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0
replies
1.4k
views
miRNA microarray analysis
miRNA affy siggenes miRNA affy siggenes
14.6 years ago Assa Yeroslaviz ★ 1.5k
0
votes
2
replies
1.8k
views
question on the cutoff for limma package
miRNA limma miRNA limma
updated 14.7 years ago by 21k • written 14.7 years ago by ▴ 100
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1
reply
1.4k
views
understanding siggenes results
miRNA affy siggenes miRNA affy siggenes
updated 14.7 years ago by 68k • written 14.7 years ago by ★ 1.5k
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1.7k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
14.7 years ago chawla ▴ 190
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0
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1.1k
views
miRNA target prediction algorithm setting used in RmiR.Hs.miRNA package.
miRNA RmiR miRNA RmiR
14.7 years ago Paul Geeleher ★ 1.3k
0
votes
1
reply
1.6k
views
advise normalization for Agilent one color Microarray for mRNA and miRNA
miRNA miRNA
updated 14.8 years ago by ★ 1.1k • written 14.8 years ago by ▴ 10
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votes
3
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2.7k
views
biomaRt ensembl mmusculus does not contain all ensembl IDs (lincRNA, miRNA etc)?
miRNA biomaRt miRNA biomaRt
updated 14.8 years ago by ▴ 540 • written 14.8 years ago by ▴ 210
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2
replies
1.4k
views
DESeq - non-differential expression
Sequencing miRNA Genetics DESeq Sequencing miRNA Genetics DESeq
updated 14.8 years ago by ▴ 180 • written 14.8 years ago by ▴ 10
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votes
3
replies
2.4k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 14.8 years ago by ▴ 310 • written 14.8 years ago by ★ 8.2k
0
votes
4
replies
1.9k
views
Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Network
updated 14.8 years ago by ▴ 310 • written 14.8 years ago by ★ 8.2k
0
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0
replies
1.6k
views
GoStats and microRNA pipeline using Biomart
miRNA Normalization GO Organism GOstats biomaRt microRNA miRNA Normalization GO Organism
14.8 years ago David ▴ 860
0
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1
reply
1.5k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.8 years ago by ★ 3.9k • written 14.8 years ago by ★ 1.5k
0
votes
7
replies
2.3k
views
How do I parse HTML table using RCurl?
miRNA miRNA
updated 14.9 years ago by ▴ 10 • written 14.9 years ago by ▴ 270
0
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0
replies
1.5k
views
quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
14.9 years ago Assa Yeroslaviz ★ 1.5k
0
votes
1
reply
1.4k
views
quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 14.9 years ago by 68k • written 14.9 years ago by ★ 1.5k
0
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0
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1.0k
views
Affymetrix miRNA Arrays
miRNA miRNA
14.9 years ago Assa Yeroslaviz ★ 1.5k
250 results • Page 3 of 5
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Comment: Pairwise comparison of multiple groups with different base by ja569116 • 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat? by TikTsossakaas33ocissalpc • 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice by Gordon Smyth 53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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