Showing : motifbreakR • reset
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Is there a function that takes an amino acid string and returns all biologically possible substitutions?
Biostrings aminoacid motifbreakR
written 15 months ago by • 0
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1.4k
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motifBreakR error with custom BSgenome
GenomeInfoDb motifbreakR
4.6 years ago Chris Seidel ▴ 80
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1.3k
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How are the MotifbreakR scores calculated, and how do they relate to one another?
MotifbreakR R motifs
6.6 years ago camerond • 0
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Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR vcf snps motif analysis
updated 7.5 years ago by ★ 6.8k • written 7.5 years ago by ▴ 840
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Motif Breaker error
bioconductor motifbreakr plotmb
8.0 years ago priyankaraina10 • 0
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1.6k
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motifbreakR VariantAnnotation namespace error on reading vcf file
motifbreakR variantannotation
updated 10.1 years ago by ▴ 50 • written 10.1 years ago by ▴ 20
6 results • Page 1 of 1
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Comment: GOseq Probability Weight Function bad fit by ejasge.r.m • 0
When performing GO analysis with GOseq, i s important to carefully check your input and assumptions, just like reviewing choices on the McD…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Answer: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Votes
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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