Bioconductor Msaprettyprint()

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msa msaprettyprint()

updated 6.7 years ago by UBod ▴ 300 • written 6.7 years ago by cav3gh • 0

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msaprettyprint() latex pdf msa

updated 7.0 years ago by UBod ▴ 300 • written 7.0 years ago by Cecil • 0

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msaprettyprint() msa multiplealignment export

updated 7.0 years ago by UBod ▴ 300 • written 7.0 years ago by Assa Yeroslaviz ★ 1.5k

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msa msaprettyprint() fasta

updated 7.6 years ago by tongtong.wang1210 • 0 • written 7.9 years ago by Olorin ▴ 50

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msa msaprettyprint() multiple sequence alignment

7.9 years ago map2085 ▴ 40

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msa latex msaPrettyPrint()

7.9 years ago Olorin ▴ 50

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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