Showing : multiplealignment • reset
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Multiple alignment of big DNA sequences files
multiplealignment genome
3.3 years ago Giuseppe ▴ 20
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How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 4.0 years ago by ▴ 290 • written 4.0 years ago by ★ 1.5k
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AlignSeqs error: protect(): protection stack overflow
multiplealignment decipher
4.3 years ago c.l.frankling • 0
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msa: How to obtain a subset of an alignment
msa Biostrings MultipleAlignment
updated 4.3 years ago by ▴ 290 • written 4.3 years ago by ▴ 10
4 results • Page 1 of 1
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Answer: airway package not compatible with R version 4.1.2 (2021-11-01) by ATpoint ▴ 970
`data(airway)` is your friend. The CRAN error comes from the fact that it is not a CRAN package, not that it is a version problem itself.
Comment: airway package not compatible with R version 4.1.2 (2021-11-01) by Lluís Revilla Sancho ▴ 660
I think it would help if you try again to install it via `BiocManager::install("airway")` and report the exact text output (without quittin…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by Michael Love 35k
This looks as expected with the control genes centered on the x-axis (yes, these can have high variance, this is discussed in work by Risso…
Comment: Housekeeping genes vary across contrast groups, using DESeq2 on NanoString data by argonvibio • 0
Hello Michael, and thank you for your reply. I have done as you described, estimating size factors with controlGenes before DESeq, but the…
Answer: DiffBind issue: zero values for all peaks in one chromosome by Rory Stark ★ 4.3k
Losing the reads for one tissue on one chromosome doesn't sound too good! I notice that you are using `DiffBind_3.0`, which is out of da…
Votes
Emirical Bayesian shrinkage for dispertion/LFC estimation
C: Emirical Bayesian shrinkage for dispertion/LFC estimation
A: Emirical Bayesian shrinkage for dispertion/LFC estimation
Comment: airway package not compatible with R version 4.1.2 (2021-11-01)
Comment: universalmotif, question about enrich_motifs function and number of hits returne
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