Biostar Multiplealignment

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multiplealignment genome

2.8 years ago Giuseppe ▴ 20

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msaprettyprint() msa multiplealignment export

updated 3.5 years ago by UBodenhofer ▴ 260 • written 3.5 years ago by Assa Yeroslaviz ★ 1.5k

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multiplealignment decipher

3.8 years ago c.l.frankling • 0

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msa Biostrings MultipleAlignment

updated 3.9 years ago by UBodenhofer ▴ 260 • written 3.9 years ago by Christof Winter ▴ 10

4 results • Page 1 of 1

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Comment: featureCounts - paired-end data by Yanfang • 0

Hey Wei shi, May I ask you something related to featureCounts? I have only paired end reads (RNAseq) mapping to its genome by bowtie2, an…

Comment: WGCNA adjust p value by Kevin Blighe 3.2k

Cross-posted: https://www.biostars.org/p/9482927/

Comment: Unique GPos taking into account mcols by Marcel Ramos 540

Hi @maltethodberg We currently do not have a method that does this. Perhaps a `duplicated` method is appropriate but I am not the develop…

Comment: What are these genes ? [How to get Ensembl IDs for them] by abf ▴ 30

Mouse genes are not typically all capitals, but I was able to find a reference to a mouse gene in NCBI to [CH36-217G15][1]. Maybe this is …

Comment: Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db. by abf ▴ 30

I should note that when I query org.Mm.eg.db using the gene Symbols associated with my differential expression data I find a 1:1 correspond…

Votes

Comment: Idea: Using DESeq2 to test a change in ratio of two genes

A: Normalized counts of DESeq2 affected by design formula?

A: Finding orthologous human/mouse ENSEMBL IDs

Comment: What are these genes ? [How to get Ensembl IDs for them]

Answer: What lfcSE is dependent upon?

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