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multiplealignment
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Multiple alignment of big DNA sequences files
multiplealignment
genome
4.4 years ago
Giuseppe
▴ 20
2
votes
11
replies
3.4k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint()
msa
multiplealignment
export
updated 5.1 years ago by
UBodenhofer
▴ 290 • written 5.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.2k
views
AlignSeqs error: protect(): protection stack overflow
multiplealignment
decipher
5.3 years ago
c.l.frankling
• 0
2
votes
2
replies
1.5k
views
msa: How to obtain a subset of an alignment
msa
Biostrings
MultipleAlignment
updated 5.4 years ago by
UBodenhofer
▴ 290 • written 5.4 years ago by
Christof Winter
▴ 10
4 results • Page
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Comment: TCGA: clinical data and expression data
by
sharifnstu1203002m
• 0
Hello, I am in the same problem. I downloaded "transcriptome profiling" data of TCGA by using the Bioconductor package. I get my gene expr…
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
by
Jonathan Göke
▴ 40
Great to hear that you are using Bambu. Yes, I think that part of your question does not have one correct answer, there are many ways in wh…
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
by
Gordon Smyth
47k
Choosing which samples to normalize together is not dependent on library size but rather on (1) whether the tissue samples are comparable a…
Comment: Atena package - error (new user)
by
lalanis1
• 0
Thanks a lot, Calvo. Will run my files with revised version soon! Best regards, Lalani
Comment: Nested paired design with covariates in limma
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Gordon Smyth
47k
Please post a new question with enough detail to answer your question. If you want bespoke advance, then you need to post the details of yo…
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Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
Comment: Question about GWASTools gdsSubset
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
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