Bioconductor MsnID

Showing : msnID • reset

2

votes

1

reply

738

views

rforproteomics proteomics msnid msnbase

3.5 years ago daniel.magnus.bader ▴ 40

4

votes

5

replies

1.6k

views

msnbase msmstests proteomics lc-ms/ms msnID

updated 4.6 years ago by Laurent Gatto 1.6k • written 4.6 years ago by fgol ▴ 10

0

votes

14

replies

2.1k

views

pbase MsnId mzid msnbase

updated 7.6 years ago by Sebastian Gibb ▴ 80 • written 7.6 years ago by viswanathan.raghuram • 0

3 results • Page 1 of 1

Recent ...

Replies

Answer: Is SeqSQC compatible with hg38? by James W. MacDonald 63k

I'll answer your question with a question. Is there any reason to believe that things like IBD or PCA or Sex checks would be dependent on t…

Comment: using featureCounts (Subread) to count only spliced reads per gene - behavior of by Gregory • 0

Thanks for the prompt response, Gordon. I'm looking for count at the gene level - the gene id is the meta feature, so one row per gene in …

Comment: DiffBind handling of replicates and consensus by Rory Stark ★ 5.0k

You may want to try different values for the `normalize` parameter: dbObj <- dba.normalize(DBA = dbObj, library = "RiP", normalize=DBA…

Comment: DiffBind: dba.plotProfile(profiles) by Rory Stark ★ 5.0k

Yes, setting `raster_quality` down is a good way to address this issue. I've taken to using `raster_quality=1` in general as I think the pl…

Comment: DiffBind: dba.plotProfile(profiles) by Dorien ▴ 10

Not really an answer as I don't know really know why , but I also had the same issue and may have found a workaround ! If I set maxSites > …

Votes

Comment: DiffBind: dba.plotProfile(profiles)

Comment: DiffBind: dba.plotProfile(profiles)

Normalisation of data using DESeq2 with multi-groups

Awards • All