Bioconductor Msnid

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rforproteomics proteomics msnid msnbase

5.7 years ago daniel.magnus.bader ▴ 50

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msnbase msmstests proteomics lc-ms/ms msnID

updated 6.8 years ago by Laurent Gatto 1.6k • written 6.8 years ago by fgol ▴ 10

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pbase MsnId mzid msnbase

updated 9.8 years ago by Sebastian Gibb ▴ 80 • written 9.8 years ago by viswanathan.raghuram • 0

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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