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mus musculus
•
reset
0
votes
0
replies
3.4k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus
biomaRt
ChIPpeakAnno
Mus musculus
biomaRt
ChIPpeakAnno
11.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq
Microarray
Normalization
GO
Classification
Clustering
Cancer
Mus musculus
probe
GO
11.2 years ago
Matthew Thornton
▴ 360
0
votes
2
replies
1.9k
views
BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus
BSgenome
BSgenome
Mus musculus
BSgenome
BSgenome
updated 10.6 years ago by
Hervé Pagès
16k • written 10.6 years ago by
Diego Diez
▴ 760
0
votes
2
replies
1.8k
views
GenomeinfoDB
Mus musculus
GenomeInfoDb
Mus musculus
GenomeInfoDb
updated 9.9 years ago by
Sonali Arora
▴ 390 • written 9.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus
biomaRt
GenomeGraphs
Mus musculus
biomaRt
GenomeGraphs
updated 15.0 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 15.0 years ago by
Mark Robinson
★ 1.1k
0
votes
1
reply
1.5k
views
decideTests and topTable
Microarray
Mus musculus
limma
Microarray
Mus musculus
limma
updated 19.1 years ago by
Gordon Smyth
50k • written 19.1 years ago by
Humberto Ortiz Zuazaga
▴ 10
0
votes
2
replies
1.4k
views
lumiR returns ExpressionSet object instead of LumiBatch
GO
Mus musculus
BSgenome
BSgenome
lumi
GO
Mus musculus
BSgenome
BSgenome
lumi
updated 10.9 years ago by
Pan Du
▴ 440 • written 10.9 years ago by
Guest User
★ 13k
0
votes
2
replies
1.3k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO
Mus musculus
PROcess
topGO
GO
Mus musculus
PROcess
topGO
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
1.2k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation
GO
Mus musculus
PROcess
topGO
Annotation
GO
Mus musculus
PROcess
topGO
14.2 years ago
Dick Beyer
★ 1.4k
1
vote
3
replies
1.2k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 6.3 years ago by
Mike Smith
★ 6.5k • written 6.3 years ago by
rbronste
▴ 60
0
votes
1
reply
1.2k
views
organism = mouse or Mus Musculus in AnnBuilder
Microarray
Organism
Mus musculus
AnnBuilder
Microarray
Organism
Mus musculus
AnnBuilder
updated 19.0 years ago by
John Zhang
★ 2.9k • written 19.0 years ago by
Christopher Wilkinson
▴ 140
0
votes
0
replies
1.2k
views
confusion about nomenclature of illumina annotationpackages
BiocViews
Annotation
Cancer
Mus musculus
illuminaHumanv1
illuminaHumanv2
probe
annotate
15.9 years ago
Lynn Amon
▴ 280
0
votes
0
replies
1.1k
views
control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation
Mus musculus
probe
affy
Annotation
Mus musculus
probe
affy
14.5 years ago
Robert Castelo
★ 3.3k
0
votes
1
reply
984
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi
stringdb
mus musculus
updated 6.2 years ago by
damian.szk
▴ 80 • written 6.2 years ago by
hkarakurt
▴ 20
14 results • Page
1 of 1
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Replies
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
BioinfGuru
▴ 30
I would use biomaRt. This is what happens when annotation occurs to early. If possible I would run the DEG analysis on the original output…
Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Votes
A: Analyzing data without replicates using DiffBind
A: Analyzing data without replicates using DiffBind
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
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Robert Castelo
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kevin.rue
▴ 350
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Wei Shi
★ 3.6k
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Gordon Smyth
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