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mutations
•
reset
0
votes
0
replies
465
views
Analyze Amplicon Seq results for variants and mutation sites
virus
pcr
amplican
mutations
15 months ago
Sara
• 0
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA
MAF
GDC
snp
mutations
updated 5.0 years ago by
Sean Davis
21k • written 5.0 years ago by
mario.zanfardino
▴ 160
1
vote
1
reply
953
views
Problem with using GDC_queryMaf()
tcgabiolinks
maf
mutations
updated 7.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.2 years ago by
d r
▴ 150
3
votes
6
replies
1.5k
views
Mutation effect on expression (RNA-Seq) using limma
limma
rnaseq
mutations
updated 7.7 years ago by
Aaron Lun
★ 28k • written 7.7 years ago by
Nicolas Rosewick
▴ 10
1
vote
4
replies
1.3k
views
Polyester and mutations
rnaseq
pair-end reads
mutations
updated 7.8 years ago by
Jeff Leek
▴ 650 • written 7.8 years ago by
H.Hasani
• 0
5 results • Page
1 of 1
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Comment: Method to find pathways different between 2 groups
by
Chris
• 0
Sorry for not clear. I just try to find papers use this method for learning purpose.
Comment: Improving the design matrices vignette in RNAseq123
by
Lluís Revilla Sancho
▴ 730
Cool. Thanks for looking into it.
Comment: Couldn't connect to server while using "pathways"
by
ATpoint
★ 4.1k
Please understand that we neither can see your screen, nor read minds. You at least need to provide the line of code and the name of the pa…
Answer: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…
Comment: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
limma is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of unavailability.…
Votes
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
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