Biostar Maf

Showing : maf • reset

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324

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maf R

updated 11 weeks ago by Kevin Blighe 3.6k • written 11 weeks ago by misslubblys • 0

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449

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TCGAbiolinks TARGET MAF

2.5 years ago ph.shimaasherif • 0

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611

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TCGA MAF GDC snp mutations

updated 3.1 years ago by Sean Davis 21k • written 3.1 years ago by mario.zanfardino ▴ 160

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658

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tcgabiolinks maf mutations

updated 5.3 years ago by Tiago Chedraoui Silva ▴ 260 • written 5.4 years ago by d r ▴ 150

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1.4k

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R biomart MAF

updated 6.9 years ago by Thomas Maurel ▴ 790 • written 6.9 years ago by jz6002 • 0

5 results • Page 1 of 1

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Comment: Error: BiocParallel errors by lxl13260684135 • 0

I came across the same problem, have you solved it?

Answer: How to get DESeq2 results for a list of genes by ATpoint ★ 1.3k

Standard rules apply for filtering in R. If the genes are the rownames of the results object `res` then: res[my_ges,] or if the colu…

Answer: ComplexHeatmap: Change font size of annotation axis values by nalaspina • 0

Someone on the original post was kind enough to provide the answer (in bold below): row_ha = rowAnnotation(foo2 = runif(10), bar2 = anno…

Answer: setting sizeFactors from scran :: caculateSumFactors. by ATpoint ★ 1.3k

You can conveniently convert your SingleCellExperiment to a DESeqDataSet, see https://bioconductor.org/packages/devel/bioc/vignettes/scran/…

Comment: Combine GRanges(List) to a single GRanges with unified breakpoints by Rodrigo • 0

@malcolm-cook-6293, thank you for your response, I'm working through your code as we speak.

Votes

How to get DESeq2 results for a list of genes

Answer: setting sizeFactors from scran :: caculateSumFactors.

Answer: ComplexHeatmap: Change font size of annotation axis values

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

A: svaseq: how many and which surrogate variables to pick

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