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nanoporernaseq
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How to normalize long-read RNA-seq data for comparison with short-reads
NanoporeRNASeq
LongRead
Normalization
ShortRead
IlluminaRNASeq
15 months ago • updated 14 months ago
Bernardo
▴ 10
1
vote
2
replies
1.1k
views
running DESeq2 from nanopore wf-alignment workflow
DESeq2
NanoporeRNASeq
updated 16 months ago by
Michael Love
41k • written 16 months ago by
shahla.kangachar
• 0
1
vote
1
reply
1.5k
views
read nanopore Fastq file
NanoporeRNASeq
RNASeq
updated 3.1 years ago by
James W. MacDonald
65k • written 3.1 years ago by
sinanoori88
• 0
0
votes
1
reply
627
views
Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression
NanoporeRNASeq
DESeq2
GeneExpression
DEVis
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
Ana
• 0
0
votes
0
replies
733
views
Job:
Postdoctoral position in Computational Biology - RNA dynamics through Nanopore - Milan (Italy)
NanoporeRNASeq
RNAdynamics
RNAmodifications
2.9 years ago
mattia pelizzola
▴ 200
5 results • Page
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Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
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