Bioconductor Nested

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603

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DESeq2 multifactorial nested

updated 21 months ago by Basti ▴ 780 • written 21 months ago by jd • 0

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1.3k

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nested DESeq2

updated 2.9 years ago by Michael Love 43k • written 3.0 years ago by yampolsk • 0

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1.3k

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deseq2 Phyloseq Nested

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by mpuli011 • 0

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991

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deseq2 Paired Nested

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by julia.chariker ▴ 10

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1.2k

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deseq2 nested de

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by gaio.transposon • 0

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1.5k

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edgeR nested glm glmQLFit

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by jcalis ▴ 10

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2.7k

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edger nested design matrix differential expression

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Mauve • 0

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2.1k

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edger nested estimatedispersions

9.9 years ago Mauve • 0

8 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

Awards • All

Teacher to dsull ▴ 40