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deseq2 nested multifactorial analysis
DESeq2 multifactorial nested
updated 23 months ago by ▴ 780 • written 23 months ago by • 0
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3
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1.4k
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Is it possible to specify random nested factor in DEseq2?
nested DESeq2
updated 3.0 years ago by 43k • written 3.2 years ago by • 0
0
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3
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1.3k
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Nested design- phyloseq_to_deseq
deseq2 Phyloseq Nested
updated 4.9 years ago by 43k • written 4.9 years ago by • 0
1
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2
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1.0k
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Correct DESeq2 interaction design and results with paired and nested data
deseq2 Paired Nested
updated 5.1 years ago by 43k • written 5.1 years ago by ▴ 10
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3
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1.3k
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DESeq2 - nested samples (individuals) - time course - conditions
deseq2 nested de
updated 5.2 years ago by 43k • written 5.3 years ago by • 0
4
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7
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1.5k
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EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR nested glm glmQLFit
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 10
1
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1
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2.7k
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EdgeR:Calculating differential expression within/between groups in nested designs
edger nested design matrix differential expression
updated 10.0 years ago by ★ 28k • written 10.0 years ago by • 0
4
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5
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2.1k
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edgeR: estimating dispersion for nested designs
edger nested estimatedispersions
10.1 years ago • updated 10.0 years ago Mauve • 0
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Answer: Differential variance analysis - can i use deseq2 by Michael Love 43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20 by shepherl 4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes by James W. MacDonald 68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data by James W. MacDonald 68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
Answer: Automatically install dependencies by shepherl 4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
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Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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