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deseq2 nested multifactorial analysis
DESeq2
multifactorial
nested
updated 2.8 years ago by
Basti
▴ 780 • written 2.8 years ago by
jd
• 0
0
votes
3
replies
1.7k
views
Is it possible to specify random nested factor in DEseq2?
nested
DESeq2
updated 3.9 years ago by
Michael Love
43k • written 4.0 years ago by
yampolsk
• 0
0
votes
3
replies
1.6k
views
Nested design- phyloseq_to_deseq
deseq2
Phyloseq
Nested
updated 5.8 years ago by
Michael Love
43k • written 5.8 years ago by
mpuli011
• 0
1
vote
2
replies
1.3k
views
Correct DESeq2 interaction design and results with paired and nested data
deseq2
Paired
Nested
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
julia.chariker
▴ 10
0
votes
3
replies
1.6k
views
DESeq2 - nested samples (individuals) - time course - conditions
deseq2
nested
de
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
gaio.transposon
• 0
4
votes
7
replies
1.9k
views
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR
nested
glm
glmQLFit
updated 6.7 years ago by
Aaron Lun
★ 29k • written 6.7 years ago by
jcalis
▴ 10
1
vote
1
reply
2.9k
views
EdgeR:Calculating differential expression within/between groups in nested designs
edger
nested
design matrix
differential expression
updated 10.9 years ago by
Aaron Lun
★ 29k • written 10.9 years ago by
Mauve
• 0
4
votes
5
replies
2.4k
views
edgeR: estimating dispersion for nested designs
edger
nested
estimatedispersions
10.9 years ago
Mauve
• 0
8 results • Page
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Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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