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deseq2 nested multifactorial analysis
DESeq2
multifactorial
nested
updated 23 months ago by
Basti
▴ 780 • written 23 months ago by
jd
• 0
0
votes
3
replies
1.4k
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Is it possible to specify random nested factor in DEseq2?
nested
DESeq2
updated 3.0 years ago by
Michael Love
43k • written 3.2 years ago by
yampolsk
• 0
0
votes
3
replies
1.3k
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Nested design- phyloseq_to_deseq
deseq2
Phyloseq
Nested
updated 4.9 years ago by
Michael Love
43k • written 4.9 years ago by
mpuli011
• 0
1
vote
2
replies
1.0k
views
Correct DESeq2 interaction design and results with paired and nested data
deseq2
Paired
Nested
updated 5.1 years ago by
Michael Love
43k • written 5.1 years ago by
julia.chariker
▴ 10
0
votes
3
replies
1.3k
views
DESeq2 - nested samples (individuals) - time course - conditions
deseq2
nested
de
updated 5.2 years ago by
Michael Love
43k • written 5.3 years ago by
gaio.transposon
• 0
4
votes
7
replies
1.5k
views
EdgeR between/within comparisons (3.5) with nested non-balanced data set
edgeR
nested
glm
glmQLFit
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
jcalis
▴ 10
1
vote
1
reply
2.7k
views
EdgeR:Calculating differential expression within/between groups in nested designs
edger
nested
design matrix
differential expression
updated 10.0 years ago by
Aaron Lun
★ 28k • written 10.0 years ago by
Mauve
• 0
4
votes
5
replies
2.1k
views
edgeR: estimating dispersion for nested designs
edger
nested
estimatedispersions
10.1 years ago • updated 10.0 years ago
Mauve
• 0
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Answer: Differential variance analysis - can i use deseq2
by
Michael Love
43k
We don't have a test of differential variance but other Bioconductor packages can, check similar posts (even on the right side bar) or use …
Comment: For some reason I can't update BiocManager to 3.20
by
shepherl
4.1k
It seems likely this was installed as an admin account and a user account would not be able to update. Someone with admin access should run…
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
by
James W. MacDonald
68k
Any query over the internet can vary in the time to completion due to the vagaries of the connection you may have. I just tried your query …
Answer: batch effect removal for agilent microarray data
by
James W. MacDonald
68k
If all of the samples in group 155 are one type, and all the other samples in 438 are the other, then no. The biological and technical vari…
Answer: Automatically install dependencies
by
shepherl
4.1k
Since `BiocManager::install` is a wrapper around `install.packages` you should be able to use the dependencies argument. Default is the de…
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Answer: UniProt.ws query for single UniRef90 ID takes several minutes
A: How to extract DESeq2 results for an interaction design
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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