Bioconductor Nested

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584

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DESeq2 multifactorial nested

updated 20 months ago by Basti ▴ 780 • written 20 months ago by jd • 0

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1.3k

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nested DESeq2

updated 2.8 years ago by Michael Love 43k • written 2.9 years ago by yampolsk • 0

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1.3k

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deseq2 Phyloseq Nested

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by mpuli011 • 0

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967

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deseq2 Paired Nested

updated 4.9 years ago by Michael Love 43k • written 4.9 years ago by julia.chariker ▴ 10

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1.2k

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deseq2 nested de

updated 5.0 years ago by Michael Love 43k • written 5.0 years ago by gaio.transposon • 0

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1.4k

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edgeR nested glm glmQLFit

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by jcalis ▴ 10

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2.7k

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edger nested design matrix differential expression

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Mauve • 0

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2.0k

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edger nested estimatedispersions

9.8 years ago Mauve • 0

8 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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