Bioconductor New version

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DESeq2 deseqdatasetfrommatrix r new version

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by megannj • 0

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package bioconductor new version

7.7 years ago farahqureshi5 • 0

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biomaRT getBM new version

updated 7.9 years ago by James W. MacDonald 67k • written 7.9 years ago by u.seemab • 0

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deseq2 new version bioconductor software error reproducibility

8.0 years ago Daniel Elsner • 0

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diffbind new version

updated 9.4 years ago by Rory Stark ★ 5.2k • written 9.5 years ago by pkra • 0

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new version

9.7 years ago David Eby ▴ 30

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upgrade new version backwards compatibility

updated 9.8 years ago by Steve Lianoglou ★ 13k • written 9.8 years ago by jrdemasi • 0

7 results • Page 1 of 1

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Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k