Bioconductor Noncoding rna

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R ensembl ensembldb noncoding rna protein coding

updated 6.0 years ago by Johannes Rainer ★ 2.1k • written 6.0 years ago by jdmentze • 0

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isoforms diffrential expression noncoding rna TSIS isoformswitchanalyzeR

6.5 years ago rbenel ▴ 40

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Prostate cancer noncoding rna biomarkers machine learning Job

8.6 years ago Hui Sun Leong ▴ 10

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dm2 bsgenome noncoding RNA

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by Patrick Schorderet ▴ 20

4 results • Page 1 of 1

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Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta by Michael Love 42k

That is the rows that did converge.

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

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