Bioconductor Paired test

Showing : paired test • reset

votes

replies

1.3k

views

paired test

written 21.7 years ago by Phguardiol@aol.com ▴ 720

votes

replies

2.1k

views

limma voom rna-seq paired test unpaired test

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by dagsbio • 0

votes

replies

2.3k

views

paired test limma

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by fansili2013 ▴ 50

votes

replies

1.4k

views

deseq2 multifactorial design paired test

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by gregory.l.stone ▴ 10

votes

replies

1.6k

views

Illumina 450k ChAMP paired test

8.8 years ago walter_teng • 0

5 results • Page 1 of 1

Recent ...

Replies

Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k

You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…

Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k

Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …

Comment: fail to use addPerROIQC in Rmd by liu.n • 0

That's odd. So it can run successfully within markdown but would be failed when knitting?

Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0

> dim(spe) [1] 19962 425

Votes

Answer: contrast matrix design for a continuous variable

A: What's the difference between p.adjust and qvalue?

Answer: DESeq2- merging technical vs biological replicates

Comment: What type of counts data to import for performing Isoform analysis in edgeR

Answer: What type of counts data to import for performing Isoform analysis in edgeR

Awards • All

Popular Question to joseph.joonsang • 0

Popular Question to Hans-Ulrich Klein ▴ 330