Showing : paired test • reset
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paired t test question ?
paired test
written 20.6 years ago by ▴ 720
3
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6
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1.2k
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paired and unpaired test at the same time with voom limma
limma voom rna-seq paired test unpaired test
updated 3.5 years ago by 48k • written 3.5 years ago by • 0
7
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4
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1.5k
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paired two groups comparison using limma
paired test limma
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 50
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2
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DESeq2 removing columns from model matrix implication
deseq2 multifactorial design paired test
updated 6.6 years ago by 40k • written 6.6 years ago by ▴ 10
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How can I do paired test on my Illumina 450k idat files with ChAMP package?
Illumina 450k ChAMP paired test
7.6 years ago walter_teng • 0
5 results • Page 1 of 1
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Comment: DESeq2, results(dds, name = <reference>) interpretation results by Rockbar • 0
Yes, I agree, the correct contrast setting is quite challenging. The vignette says >contrast: a list of 2 character vectors: the names of…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Michael Love 40k
Advantage and disadvantage depends on the aim, what you plan to do with them (testing, plots, etc.). lengthScaledTPM puts back *in* the ge…
Comment: DESeq2, results(dds, name = <reference>) interpretation results by James W. MacDonald 63k
No, putting -1 in the design matrix is a cell means model, which is the opposite. If you used `~ Cond + Cond:Time`, you would specify a fac…
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Christian • 0
Thank you for the response and apologies for my late reply. I think I´m starting getting the concept now. The hints with the cqn is quite …
Comment: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts? by Christian • 0
Thank you for the response and apologies for my late reply. It`s a relieve that lengthScaledTPM and counts with offset both seem to perform…
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Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Answer: Does countsFromAbundance="lengthScaledTPM" produce un-normalized counts?
Answer: Remove duplicates of colData in TreeSummarizedExperiment
Answer: Remove duplicates of colData in TreeSummarizedExperiment
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