Biostar Paired-end reads

Showing : paired-end reads • reset

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845

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summarizeoverlaps paired-end reads readGAlignmentPairs

5.3 years ago teresati ▴ 10

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1.1k

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rsamtools paired-end reads countbam

updated 5.9 years ago by Martin Morgan 25k • written 5.9 years ago by Dario Strbenac ★ 1.5k

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632

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quasr paired-end reads rnaseq

5.6 years ago guillaume.dachy • 0

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600

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quasr quasr error paired-end reads rnaseq

5.6 years ago guillaume.dachy • 0

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719

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diffbind paired-end reads

updated 21 months ago by Rory Stark ★ 4.4k • written 5.5 years ago by rbronste ▴ 60

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662

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dnaseq rtracklayer paired-end reads

5.1 years ago zwfanwz678 • 0

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852

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paired-end reads bam file

4.7 years ago ioannis.vardaxis ▴ 30

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669

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quasr rnaseq paired-end reads

5.6 years ago guillaume.dachy • 0

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Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by ATpoint ★ 1.4k

Please provide an example of that sheet (at best after reading into R and then shared via `dput()`) if you are seeking help. In general the…

Comment: Which is the best type of data for correlation or survival analysis by Yang Shi • 0

Hi ATpoint, thanks for your reply and show me the thread. But there are still some questions: (1) **dds <- estimateSizeFactors(dds); ntd <…

Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by swbarnes2 ★ 1.1k

Can't you just Google for a tutorial?

Comment: GSEA preranked analysis downstream of DEseq2 by hermidalc ▴ 10

Would using combining both as a ranking metric via `log2FC * -log10(p-value)` overcome these shortcomings? Or introduce new ones?

Comment: Which is the best type of data for correlation or survival analysis by ATpoint ★ 1.4k

Asked before: https://support.bioconductor.org/p/103464/

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Comment: what should be our references when 2 samples which I compare are treated and the