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DESeq2 interaction pairwise

3.2 years ago Lucas • 0

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 6.0 years ago by Michael Love 42k • written 6.0 years ago by Ricardo Rodrigues • 0

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bam diversity distance pairwise

7.1 years ago achaillon • 0

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deseq2 multifactor pairwise

8.5 years ago • updated 8.4 years ago aziza ▴ 20

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rnaseq pairwise multiple comparisons deseq2

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by hamaor • 0

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Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Gordon Smyth 51k

`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.

Comment: DESeq Input from Salmon + tximport/tximeta by LuciaNhu • 0

Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…

Answer: DESeq Input from Salmon + tximport/tximeta by Michael Love 42k

Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.

Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…

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Answer: DESeq Input from Salmon + tximport/tximeta

Answer: featureCounts segmentation fault with large chromosomes

Answer: Supercells with Basilisk fails for dtype('float64') to dtype('int64') conversion

Comment: Extension to knitr/Rmarkdown to ignore only specific warnings (not all) in a chu

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