Bioconductor Pairwise

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DESeq2 interaction pairwise

4.4 years ago Lucas • 0

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pairwise deseq2 extracting contrasts resultsnames results deseq2

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by Ricardo Rodrigues • 0

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bam diversity distance pairwise

8.3 years ago achaillon • 0

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deseq2 multifactor pairwise

9.7 years ago • updated 9.6 years ago aziza ▴ 20

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1.9k

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rnaseq pairwise multiple comparisons deseq2

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by hamaor • 0

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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