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pairwise
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1
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pairwise comparison + interaction term in DESeq2
DESeq2
interaction
pairwise
3.3 years ago
Lucas
• 0
0
votes
3
replies
1.1k
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise
deseq2
extracting contrasts
resultsnames
results deseq2
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
Ricardo Rodrigues
• 0
0
votes
0
replies
1.0k
views
pairwise dist from bam file
bam
diversity
distance
pairwise
7.1 years ago
achaillon
• 0
4
votes
12
replies
3.6k
views
pairwise combining factors or multifactor analysis ? (DESeq2)
deseq2
multifactor
pairwise
8.6 years ago • updated 8.5 years ago
aziza
▴ 20
0
votes
4
replies
1.5k
views
is it possible to create this comparison?
rnaseq
pairwise
multiple comparisons
deseq2
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
hamaor
• 0
5 results • Page
1 of 1
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Replies
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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