Showing : pathways • reset
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KEGGgraph ??
Pathways GO GOstats keggorth KEGGgraph Pathways GO GOstats keggorth KEGGgraph
17.2 years ago Paul Evans ▴ 180
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reasonable Illumina hyperG test
Pathways lumi Pathways lumi
updated 17.2 years ago by 68k • written 17.2 years ago by ▴ 370
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GO over representation analysis
Annotation Pathways GO Organism db0 AnnBuilder PROcess maanova AnnotationDbi Annotation
updated 17.3 years ago by ▴ 220 • written 17.3 years ago by ★ 7.2k
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Filtering gene list prior to statistical testing
Pathways Pathways
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 40
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Help using ENSMUSG ids in GOstats
Microarray Pathways GOstats Microarray Pathways GOstats
updated 17.6 years ago by ★ 5.5k • written 17.6 years ago by ▴ 30
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BIRD 2008 Conference Call for papers
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.0 years ago Prof. Roland Wagner ▴ 100
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BIRD 2008
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.0 years ago Prof. Roland Wagner ▴ 100
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BIRD 2008 Conference
Genetics Pathways Cancer microRNA Genetics Pathways Cancer microRNA
18.0 years ago Prof. Roland Wagner ▴ 100
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2.9k
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GSEA and Broad gene sets
Pathways GSEABase Pathways GSEABase
updated 18.0 years ago by ★ 1.2k • written 18.0 years ago by ▴ 30
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BIRD 2008
Genetics Pathways Cancer PROcess microRNA a4 Genetics Pathways Cancer PROcess microRNA
18.1 years ago Prof. Roland Wagner ▴ 100
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1.4k
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KEGG pathway
Pathways Pathways
updated 18.2 years ago by ★ 7.2k • written 18.2 years ago by ▴ 130
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stat/math question on Category vignette
Pathways Category Pathways Category
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 890
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KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 18.3 years ago by ★ 2.9k • written 18.3 years ago by ▴ 30
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KEGG package
Pathways Pathways
updated 18.3 years ago by ★ 2.9k • written 18.3 years ago by ▴ 130
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html report of hyperGTest question
Pathways GO Pathways GO
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 100
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The above Feelgood Formula enshrines the common philosophy that the better you treat people, the better they will work.
Pathways PROcess BRAIN Pathways PROcess BRAIN
18.4 years ago Neddy ▴ 10
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PFAM annotation from HyperG
Pathways annotate Category Pathways annotate Category
18.5 years ago Dario Greco ▴ 310
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how to find the children identifiers of a specific KEGGidentifier in R??
Microarray Annotation Pathways GO Microarray Annotation Pathways GO
18.6 years ago Francois Pepin ★ 1.3k
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hyperGTest, KEGG
Annotation Pathways multtest siggenes RBGL GOstats Annotation Pathways multtest siggenes
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 80
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globaltest
Pathways globaltest Pathways globaltest
updated 18.7 years ago by ▴ 550 • written 18.7 years ago by ▴ 40
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in case you have a visualization paper to submit
Microarray Alignment Pathways Visualization Microarray Alignment Pathways Visualization
18.7 years ago Vincent J. Carey, Jr. 6.7k
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Undergraduate Student Project Summer 2007, at EBI: the synapse and the brain
Pathways BRAIN Pathways BRAIN
18.8 years ago Wolfgang Huber ★ 13k
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BIRD 07 call for particpation
Pathways microRNA Pathways microRNA
19.0 years ago Prof.Roland Wagner ▴ 60
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1.0k
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KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
19.0 years ago Nianhua Li ▴ 870
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8
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2.7k
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AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 19.0 years ago by ▴ 190 • written 19.0 years ago by ★ 2.9k
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GOstats and KEGG
Pathways GO GOstats Pathways GO GOstats
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 190
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BIRD: New paper and submission deadline: September 22
Pathways microRNA Pathways microRNA
19.2 years ago Prof.Roland Wagner ▴ 60
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895
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drosphila2PATH question
Pathways affy Pathways affy
updated 19.2 years ago by ▴ 870 • written 19.2 years ago by ▴ 170
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a simple question
Pathways Pathways
19.3 years ago Weiwei Shi ★ 1.2k
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BIRD Call for papers and posrters: New submission deadline September 15
Pathways microRNA Pathways microRNA
19.3 years ago Prof.Roland Wagner ▴ 60
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1.6k
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Postdoctoral Fellowship opportunity at Rosetta Inpharmatics, Seat tle, WA
Pathways Network Cancer Pathways Network Cancer
19.3 years ago Rohl, Carol A ▴ 10
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1.4k
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athPkgBuilder data source
Annotation Pathways GO probe oligo Annotation Pathways GO probe oligo
updated 19.3 years ago by ▴ 250 • written 19.3 years ago by ▴ 870
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BIRD: Fiest internation conference : Bioinformatics in Research and Development
Pathways microRNA Pathways microRNA
19.4 years ago Prof.Roland Wagner ▴ 60
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1
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1.0k
views
Gene set analysis/Global test with 3 replicates
Pathways Pathways
updated 19.4 years ago by ▴ 550 • written 19.4 years ago by ▴ 500
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1.2k
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BIRD
Pathways microRNA Pathways microRNA
19.5 years ago Prof.Roland Wagner ▴ 60
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5
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2.3k
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extracting interactions between members of the KEGG pathways
Pathways Infrastructure Cancer graph Pathways Infrastructure Cancer graph
updated 19.7 years ago by ★ 5.5k • written 19.7 years ago by ▴ 90
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Courses in Practical DNA Microarray Analysis 2006
Microarray Genetics Pathways Preprocessing Classification Cancer Microarray Genetics
19.9 years ago Wolfgang Huber ★ 13k
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heatmap and hcluster from limma out put object
Pathways limma Pathways limma
20.3 years ago Gordon Smyth 53k
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heatmap and hcluster from limma out put object
Pathways limma Pathways limma
20.3 years ago Marcelo Luiz de Laia ▴ 770
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826
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nf kappa pathway
Pathways Pathways
20.5 years ago Auer Michael ▴ 250
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3
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1.9k
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R: Pathway Information
Genetics Pathways Cancer probe globaltest Genetics Pathways Cancer probe globaltest
updated 20.5 years ago by ▴ 360 • written 20.5 years ago by ★ 2.9k
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1.4k
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globaltest procedure
Pathways Survival globaltest Pathways Survival globaltest
20.7 years ago Goeman, J.J. MSTAT ▴ 150
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6
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1.9k
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Getting GO terms and other annotation for Golub data set
Annotation Pathways GO Annotation Pathways GO
20.8 years ago michael watson IAH-C ★ 3.4k
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postdoc available
Pathways Network Classification Cancer Pathways Network Classification Cancer
21.9 years ago Jean-Philippe Vert ▴ 10
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2
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1.2k
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index between genes and pathways
Pathways GO Yeast Pathways GO Yeast
updated 22.0 years ago by ★ 5.5k • written 22.0 years ago by ▴ 80
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1.1k
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Limma issues.
Pathways limma Pathways limma
updated 22.1 years ago by 53k • written 22.1 years ago by ▴ 150
246 results • Page 5 of 5
Recent ...
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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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