Bioconductor Pca scree plot

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pca plot pca scree plot pca2go

updated 6.7 years ago by Steve Lianoglou ★ 13k • written 6.7 years ago by suranandbabu85 • 0

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pca deseq2 PCA scree plot

8.6 years ago CandiceChuDVM ▴ 40

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Answer: Differential variability modelling with vst() expression by Gordon Smyth 52k

See Phipson, B., Oshlack, A. DiffVar: a new method for detecting differential variability with application to methylation in cancer and …

Answer: Differential variability modelling with vst() expression by Michael Love 43k

Looking at differential variance across groups, where you regress out orthogonal nuisance factors from VST data, seems correct and would po…

Answer: Installation error for Rsamtools. by James W. MacDonald 67k

It's already installed. Note the warning: ``` Warning message: package(s) not installed when version(s) same as or greater than curren…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by Nicholas • 0

Just an update on this: I tried ```tximport``` with ```tx2gene``` objects from the three annotation packages and from the GTF file itself. …

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by Nicholas • 0

Got it, so using the GTF directly rather than any of the annotation packages will yield more accurate results than any of the packages? I g…

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A: Trajectory analysis for single cell sequencing

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