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pd.hugene.2.0.st
•
reset
1
vote
8
replies
1.7k
views
boxplot, microarray, hugene 2.0 st
boxplot
microarray
pd.hugene.2.0.st
9.1 years ago
kanacska
▴ 10
0
votes
3
replies
2.6k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy
pd.hugene.2.0.st
hugene20
annotation
microarray
9.1 years ago
kanacska
▴ 10
6
votes
5
replies
1.8k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
Paulo Nuin
▴ 200
9
votes
6
replies
3.9k
views
Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotation options
microarray
oligo
affycoretools
pd.hugene.2.0.st
hugene20sttranscriptcluster.db
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
svlachavas
▴ 830
1
vote
5
replies
1.2k
views
Correct annotation R package for human clariom array analysis
clariom
oligo
affycoretools
pd.hugene.2.0.st
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
svlachavas
▴ 830
1
vote
5
replies
1.7k
views
HuGene2.0 array annotation
annotation
oligo
pd.hugene.2.0.st
8.5 years ago
sylvia
▴ 10
4
votes
10
replies
2.3k
views
Limma/oligo always crashing
limma
microarray
pd.hugene.2.0.st
hugene20
oligo
8.3 years ago
hakimelakhrass
• 0
0
votes
0
replies
1.3k
views
Reading Affymetrix data from pd.hugene.2.0.st using oligo for RNA degradation plot
oligo
rnadegradationplot
affymetrix microarrays
pd.hugene.2.0.st
8.2 years ago
Biologist
▴ 110
8 results • Page
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
yes my mistake I mixed the equation up while copying into the reply box. Should have been: ```{r} 2 * (1 - pt(abs(tstat), df = df.residual…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
Gordon Smyth
50k
The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
by
nbay13
• 0
EDIT: removed
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Votes
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
Answer: Extremely small p-values using Limma for proteomic data
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
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