Bioconductor Ebayes

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topTable MicroarrayData ebayes limma Microarray

5.0 years ago snijesh ▴ 200

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limma eBayes decideTests topTable

updated 6.0 years ago by Gordon Smyth 53k • written 6.0 years ago by irene.roman • 0

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limma eBayes

updated 7.0 years ago by Gordon Smyth 53k • written 7.0 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 21 months ago by Gordon Smyth 53k • written 7.4 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

8.0 years ago darthratus • 0

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ebayes limma bioconductor

updated 8.3 years ago by Gordon Smyth 53k • written 8.3 years ago by reventropy2003 ▴ 10

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ebayes limma

8.3 years ago peirinl • 0

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eBayes limma error

updated 8.6 years ago by James W. MacDonald 68k • written 8.6 years ago by calen.p.ryan • 0

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ebayes limma voom

9.0 years ago bag59 • 0

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2.6k

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limma ebayes

updated 2.8 years ago by Gordon Smyth 53k • written 9.1 years ago by cemcdono • 0

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limma ebayes

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 10.5 years ago by Gordon Smyth 53k • written 10.5 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 10.6 years ago by James W. MacDonald 68k • written 10.6 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 11.1 years ago by Gordon Smyth 53k • written 11.1 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

Votes

Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760