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Showing :
ebayes
•
reset
6
votes
4
replies
1.2k
views
Limma outputs different results for same sample?
topTable
MicroarrayData
ebayes
limma
Microarray
3.2 years ago
snijesh
▴ 20
0
votes
5
replies
1.2k
views
eBayes options and decideTests method
limma
eBayes
decideTests
topTable
updated 4.2 years ago by
Gordon Smyth
50k • written 4.2 years ago by
irene.roman
• 0
0
votes
6
replies
1.8k
views
eBayes(fit_object, trend = T) gives: Error in fitFDist(var, df1 = df, covariate = covariate) : NA covariate values not allowed
limma
eBayes
updated 5.2 years ago by
Gordon Smyth
50k • written 5.2 years ago by
Sebastian Hesse
▴ 70
3
votes
1
reply
1.5k
views
Limma without eBayes, is it indistunguishable from Ordinary Least Square?
Limma
ebayes
bayesian
ls
updated 2 days ago by
Gordon Smyth
50k • written 5.6 years ago by
CantExitVIM
▴ 10
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.2 years ago
darthratus
• 0
1
vote
2
replies
1.5k
views
Limma Ebayes on SILAC data
ebayes
limma
bioconductor
updated 6.5 years ago by
Gordon Smyth
50k • written 6.5 years ago by
reventropy2003
▴ 10
0
votes
6
replies
2.1k
views
Error in last step of Limma analysis (eBayes)
ebayes
limma
6.6 years ago
peirinl
• 0
1
vote
3
replies
1.6k
views
Error from eBayes in limma package
eBayes
limma
error
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
calen.p.ryan
• 0
2
votes
2
replies
1.5k
views
Can one get LSMeans and expression confidence intervals from limma and voom?
ebayes
limma
voom
7.2 years ago
bag59
• 0
4
votes
2
replies
1.9k
views
error in Limma analysis - estimated df (df.0) for prior value of variance (s2.post) is Inf
limma
ebayes
updated 13 months ago by
Gordon Smyth
50k • written 7.3 years ago by
cemcdono
• 0
1
vote
1
reply
923
views
Limma ebayes function error without any messages
limma
ebayes
updated 8.5 years ago by
Aaron Lun
★ 28k • written 8.5 years ago by
bharata1803
▴ 60
3
votes
3
replies
1.7k
views
Sub : Limma ebayes
limma
ebayes
statistical inference
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
ssrajan86
• 0
0
votes
1
reply
1.3k
views
LmFit and eBayes on merged ESET giving errors
limma
eset
error
ebayes
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
Vani
▴ 20
6
votes
5
replies
1.8k
views
Limma ebayes returns a list with Affy pd.hugene.2.0.st arrays
ebayes
expression
affymetrix
pd.hugene.2.0.st
limma
updated 9.3 years ago by
Gordon Smyth
50k • written 9.3 years ago by
Paulo Nuin
▴ 200
14 results • Page
1 of 1
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Comment: deseq2 results
by
swbarnes2
★ 1.4k
It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…
Votes
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
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