Bioconductor Ebayes

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topTable MicroarrayData ebayes limma Microarray

4.9 years ago snijesh ▴ 200

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2.1k

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limma eBayes decideTests topTable

updated 5.9 years ago by Gordon Smyth 53k • written 5.9 years ago by irene.roman • 0

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limma eBayes

updated 6.9 years ago by Gordon Smyth 53k • written 6.9 years ago by Sebastian Hesse ▴ 70

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Limma ebayes bayesian ls

updated 20 months ago by Gordon Smyth 53k • written 7.3 years ago by CantExitVIM ▴ 10

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model.matrix lmFit eBayes GEOquery limma

7.9 years ago darthratus • 0

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1.9k

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ebayes limma bioconductor

updated 8.2 years ago by Gordon Smyth 53k • written 8.2 years ago by reventropy2003 ▴ 10

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ebayes limma

8.3 years ago peirinl • 0

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2.1k

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eBayes limma error

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by calen.p.ryan • 0

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ebayes limma voom

8.9 years ago bag59 • 0

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2.5k

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limma ebayes

updated 2.8 years ago by Gordon Smyth 53k • written 9.0 years ago by cemcdono • 0

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limma ebayes

updated 10.2 years ago by Aaron Lun ★ 29k • written 10.2 years ago by bharata1803 ▴ 60

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limma ebayes statistical inference

updated 10.4 years ago by Gordon Smyth 53k • written 10.5 years ago by ssrajan86 • 0

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limma eset error ebayes

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 11.0 years ago by Gordon Smyth 53k • written 11.0 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

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Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ja569116 • 0

Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …

Answer: limpa analysis advice by Gordon Smyth 53k

It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…

Answer: When to use edgeR or limma by Gordon Smyth 53k

The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k

I updated the above answer today.

Answer: When to use edgeR or limma by James W. MacDonald 68k

I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…

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Answer: When to use edgeR or limma

A: deseq2 - paired samples in 2 sequencing types with very different library sizes

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