Biostar Ebayes

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485

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topTable MicroarrayData ebayes limma Microarray

15 months ago snijesh ▴ 20

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381

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limma eBayes decideTests topTable

updated 2.2 years ago by Gordon Smyth 45k • written 2.2 years ago by irene.roman • 0

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592

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limma eBayes

updated 3.2 years ago by Gordon Smyth 45k • written 3.2 years ago by Sebastian Hesse ▴ 60

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622

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Limma ebayes bayesian ls

updated 3.6 years ago by Gordon Smyth 45k • written 3.6 years ago by CantExitVIM ▴ 10

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828

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model.matrix lmFit eBayes GEOquery limma

4.2 years ago darthratus • 0

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873

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ebayes limma bioconductor

updated 4.5 years ago by Gordon Smyth 45k • written 4.5 years ago by reventropy2003 ▴ 10

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1.3k

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ebayes limma

4.6 years ago peirinl • 0

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1.1k

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eBayes limma error

updated 4.8 years ago by James W. MacDonald 59k • written 4.8 years ago by calen.p.ryan • 0

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978

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ebayes limma voom

5.2 years ago bag59 • 0

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1.2k

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limma ebayes

updated 5.3 years ago by Gordon Smyth 45k • written 5.3 years ago by cemcdono • 0

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643

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limma ebayes

updated 6.5 years ago by Aaron Lun ★ 27k • written 6.5 years ago by bharata1803 ▴ 40

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1.2k

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limma ebayes statistical inference

updated 6.8 years ago by Gordon Smyth 45k • written 6.8 years ago by ssrajan86 • 0

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935

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limma eset error ebayes

updated 6.9 years ago by James W. MacDonald 59k • written 6.9 years ago by Vani ▴ 20

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ebayes expression affymetrix pd.hugene.2.0.st limma

updated 7.3 years ago by Gordon Smyth 45k • written 7.3 years ago by Paulo Nuin ▴ 200

14 results • Page 1 of 1

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Answer: Robust Multi-array Average could get negative value or not? by James W. MacDonald 59k

After running RMA, your data have been logged, base 2. Any value < 1 will have a negative value. Looking at the data from that GEO submissi…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Yang Shi • 0

Got that sir, thanks so much!

Comment: UniprotKB AC/ID to Entrez ID Conversion by Guido Hooiveld ★ 3.2k

No, no need to modify `up`. It somehow has to do with the R.BioC version; it works when using the latest versions (R-4.2.0/BioC-3.15), but…

Comment: UniprotKB AC/ID to Entrez ID Conversion by tom.kloter • 0

Thanks a lot for your response! I tried the code in my script and got to the following result: ``` > up <- UniProt.ws(taxId=9606) > up "U…

Comment: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array by Guido Hooiveld ★ 3.2k

Regarding the normalization method (SCAN); I have only used RMA for the reasons James explained in one of your other threads (https://suppo…

Votes

Answer: Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array

Answer: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

Comment: Print EnhancedVolcano Plot as jpeg or similar in R Notebook

A: coefficient not estimable (limma warning)

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Scholar to Guido Hooiveld ★ 3.2k

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Scholar to SamGG ▴ 270

Prophet to johnmcma ▴ 10