Bioconductor PdInfoBuilder

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Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess

updated 16.9 years ago by Mark Robinson ★ 1.1k • written 16.9 years ago by Edward Oakeley ▴ 20

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affy pdInfoBuilder affy pdInfoBuilder

16.9 years ago Matt Settles ▴ 70

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1.3k

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pdInfoBuilder pdInfoBuilder

updated 16.9 years ago by Sean Davis 21k • written 16.9 years ago by Harry Mangalam ▴ 70

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1.2k

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oligo pdInfoBuilder oligoClasses oligo pdInfoBuilder oligoClasses

written 17.0 years ago by Matt Settles ▴ 70

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1.6k

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BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder

17.0 years ago Rob Dunne ▴ 230

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BiocViews Genetics Yeast cdf probe affy affxparser biocViews oligo pdInfoBuilder Yeast

17.1 years ago Ludo Muller ▴ 50

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976

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cdf pdInfoBuilder cdf pdInfoBuilder

updated 17.6 years ago by James W. MacDonald 68k • written 17.6 years ago by maerker@atlas-biolabs.de ▴ 10

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1.1k

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cdf gcrma oligo pdInfoBuilder cdf gcrma oligo pdInfoBuilder

updated 18.0 years ago by Kasper Daniel Hansen ★ 6.5k • written 18.0 years ago by Ido M. Tamir ▴ 320

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1.9k

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BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf

updated 18.2 years ago by Seth Falcon ★ 7.4k • written 18.2 years ago by Marianne Tuefferd ▴ 10

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

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Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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