Showing : pearsoncorrelation • reset
0
votes
1
reply
1.4k
views
Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 2.1 years ago by ★ 5.0k • written 7.8 years ago by • 0
0
votes
0
replies
1.1k
views
How to manage self loop in gene coexpression network constructed using Pearson correlation in Cor() function
rna-seq gcn desq2 pearsoncorrelation
7.6 years ago aishu.jp ▴ 30
0
votes
2
replies
2.5k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray pearsoncorrelation coexpression spearman
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
2
votes
1
reply
2.3k
views
DiffBind affinity vs occupancy Heatmaps
diffbind heatmap pearsoncorrelation
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by ▴ 10
4
votes
12
replies
6.2k
views
remove batch effect using limma
limma rnaseq batch effect pearsoncorrelation
updated 9.9 years ago by ★ 29k • written 9.9 years ago by • 0
1
vote
2
replies
11k
views
Use of various distance measures and clustering methods in heatmap creation
gplots heatmap.2 bioconductor pearsoncorrelation average
10.5 years ago svlachavas ▴ 840
6 results • Page 1 of 1
Recent ...
Replies
Answer: When to use edgeR or limma by Gordon Smyth 53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
I updated the above answer today.
Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Awards • All
Popular Question to Stephanie M. Gogarten ▴ 890
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Locations • All
United States, 4 minutes ago
Barcelona, Spain, 1 hour ago
United States, 1 hour ago
Germany, 1 hour ago
France/Marseille/Inserm, 1 hour ago
Traffic: 1192 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6