Bioconductor Pearsoncorrelation

Showing : pearsoncorrelation • reset

votes

1.3k

views

correlation pearsoncorrelation rna-seq differential gene expression

updated 20 months ago by ATpoint ★ 4.9k • written 7.4 years ago by saad_k6 • 0

votes

replies

1.0k

views

rna-seq gcn desq2 pearsoncorrelation

7.2 years ago aishu.jp ▴ 30

votes

replies

2.3k

views

microarray pearsoncorrelation coexpression spearman

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by juls • 0

votes

2.1k

views

diffbind heatmap pearsoncorrelation

updated 9.2 years ago by Rory Stark ★ 5.2k • written 9.2 years ago by shubhibartaria ▴ 10

votes

replies

5.9k

views

limma rnaseq batch effect pearsoncorrelation

updated 9.5 years ago by Aaron Lun ★ 29k • written 9.5 years ago by elpsakkas • 0

vote

replies

11k

views

gplots heatmap.2 bioconductor pearsoncorrelation average

10.1 years ago svlachavas ▴ 840

6 results • Page 1 of 1

Recent ...

Replies

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Votes

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

Awards • All