Showing : pgsea • reset
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Extract info from smc object
PGSEA smc object
6.3 years ago da.de ▴ 30
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PGSEA Steps Using Bioconductor
microarray pgsea
updated 8.2 years ago by ★ 8.2k • written 8.2 years ago by • 0
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Running the GSEA algorithm
Microarray GeneSetEnrichment PGSEA GSEABase GSRI SeqGSEA Microarray GeneSetEnrichment GSRI
updated 10.1 years ago by ★ 13k • written 10.1 years ago by ▴ 70
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Running the GSEA algorithm
Infrastructure PGSEA GSEABase SeqGSEA Infrastructure PGSEA GSEABase SeqGSEA
updated 10.1 years ago by ★ 1.3k • written 10.1 years ago by ▴ 660
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[Rocky] - R code for PGSEA package to identify differentially expressed genes
GO affy limma GLAD PGSEA GSEABase GO affy limma GLAD PGSEA GSEABase
12.3 years ago Valerie Obenchain ★ 6.8k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
12.8 years ago Valerie Obenchain ★ 6.8k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
12.8 years ago Iain Gallagher ▴ 930
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PGSEA and Ruuid
Ruuid PGSEA Ruuid PGSEA
15.3 years ago Daniel Klevebring ▴ 80
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Loading the PGSEA package.
PGSEA PGSEA
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 20
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a couple of questions on PGSEA package and GSEA
PGSEA PGSEA
updated 15.7 years ago by ▴ 210 • written 15.7 years ago by ★ 1.2k
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ENTREZ identifiers for PGSEA
GO lumi PGSEA GO lumi PGSEA
updated 15.8 years ago by ▴ 90 • written 15.8 years ago by ▴ 370
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PGSEA question
probe PGSEA probe PGSEA
updated 16.2 years ago by ▴ 210 • written 16.2 years ago by ▴ 70
12 results • Page 1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Intent to delete when going home. Sorry for that!
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
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