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pgsea
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1.0k
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PGSEA and smcPlot
GO
hgu133plus2
PGSEA
GO
hgu133plus2
PGSEA
12.8 years ago
Iain Gallagher
▴ 930
0
votes
3
replies
1.3k
views
PGSEA question
probe
PGSEA
probe
PGSEA
updated 16.3 years ago by
Furge, Kyle
▴ 210 • written 16.3 years ago by
Johan Lindberg
▴ 70
0
votes
2
replies
1.2k
views
ENTREZ identifiers for PGSEA
GO
lumi
PGSEA
GO
lumi
PGSEA
updated 15.9 years ago by
Dykema, Karl
▴ 90 • written 15.9 years ago by
Sebastien Gerega
▴ 370
0
votes
3
replies
2.0k
views
a couple of questions on PGSEA package and GSEA
PGSEA
PGSEA
updated 15.7 years ago by
Furge, Kyle
▴ 210 • written 15.7 years ago by
Weiwei Shi
★ 1.2k
0
votes
3
replies
1.3k
views
Loading the PGSEA package.
PGSEA
PGSEA
updated 15.3 years ago by
Dykema, Karl
▴ 90 • written 15.3 years ago by
Marcus Gry
▴ 20
0
votes
0
replies
847
views
PGSEA and Ruuid
Ruuid
PGSEA
Ruuid
PGSEA
15.3 years ago
Daniel Klevebring
▴ 80
0
votes
0
replies
1.1k
views
PGSEA and smcPlot
GO
hgu133plus2
PGSEA
GO
hgu133plus2
PGSEA
12.8 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
[Rocky] - R code for PGSEA package to identify differentially expressed genes
GO
affy
limma
GLAD
PGSEA
GSEABase
GO
affy
limma
GLAD
PGSEA
GSEABase
12.3 years ago
Valerie Obenchain
★ 6.8k
0
votes
5
replies
3.4k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 10.2 years ago by
Julian Gehring
★ 1.3k • written 10.2 years ago by
enricoferrero
▴ 660
0
votes
3
replies
1.8k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 10.2 years ago by
Steve Lianoglou
★ 13k • written 10.2 years ago by
Leif Väremo
▴ 70
0
votes
1
reply
1.0k
views
PGSEA Steps Using Bioconductor
microarray
pgsea
updated 8.3 years ago by
Dan Tenenbaum
★ 8.2k • written 8.3 years ago by
livdiehard
• 0
0
votes
0
replies
766
views
Extract info from smc object
PGSEA
smc object
6.4 years ago
da.de
▴ 30
12 results • Page
1 of 1
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Comment: Volcano plot of scRNA-seq data not "centered"
by
ATpoint
★ 4.2k
My comment was generic. If your experiment causes drastic shifts then the situation might be different. The advise is the same: Try to use …
Comment: conumee with Infinium MethylationEPIC v2.0
by
Maximus
• 0
Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…
Comment: Volcano plot of scRNA-seq data not "centered"
by
tjl
• 0
Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Votes
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
DESeq2 swap ensembl gene id rownames with gene symbol column
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DESeq2: add annotations (from data frame) to DESeqDataSet
Add new columns to DESeqResults from text file by matching rownames.
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Robert Castelo
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kevin.rue
▴ 350
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Wei Shi
★ 3.6k
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Gordon Smyth
50k
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jovel_juan
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