Bioconductor Pileup

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616

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Pysam pileup Rsamtools RNASeq

14 months ago Xinqi • 0

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520

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Rsamtools pileup

17 months ago romain.lannes • 0

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627

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Rsamtools pileup

20 months ago alexandr.gopanenko ▴ 50

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641

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Rsamtools pileup

22 months ago JoeMG • 0

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923

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Rsamtools pileup insertion deletion

4.3 years ago madsheilskov ▴ 10

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2.6k

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Rsamtools pileup number of reads

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by mgray ▴ 10

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1.2k

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pileup rsamtools

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by Jeremy Leipzig ▴ 70

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1.4k

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rsamtools pileup

8.2 years ago oscar puig • 0

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1.2k

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Rsamtools GAlignments pileup

updated 8.6 years ago by Martin Morgan 25k • written 8.6 years ago by jesper.gadin ▴ 10

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rsamtools pileup

8.6 years ago TimothéeFlutre ▴ 80

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1.6k

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rsamtools pileup

8.9 years ago komal.rathi ▴ 120

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2.7k

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pileup rsamtools bam genomicalignments

updated 9.5 years ago by Nathaniel Hayden ▴ 180 • written 9.5 years ago by Sam Buckberry • 0

12 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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