Bioconductor Pileup

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1000

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Pysam pileup Rsamtools RNASeq

2.1 years ago Xinqi • 0

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717

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Rsamtools pileup

2.4 years ago romain.lannes • 0

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931

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Rsamtools pileup

2.6 years ago alexandr.gopanenko ▴ 50

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826

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Rsamtools pileup

2.8 years ago JoeMG • 0

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Rsamtools pileup insertion deletion

5.2 years ago madsheilskov ▴ 10

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Rsamtools pileup number of reads

updated 5.8 years ago by Martin Morgan 25k • written 5.8 years ago by mgray ▴ 10

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pileup rsamtools

updated 7.8 years ago by Martin Morgan 25k • written 7.8 years ago by Jeremy Leipzig ▴ 70

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rsamtools pileup

9.2 years ago oscar puig • 0

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Rsamtools GAlignments pileup

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by jesper.gadin ▴ 10

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rsamtools pileup

9.6 years ago TimothéeFlutre ▴ 80

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1.9k

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rsamtools pileup

9.8 years ago komal.rathi ▴ 120

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3.1k

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pileup rsamtools bam genomicalignments

updated 10.4 years ago by Nathaniel Hayden ▴ 180 • written 10.5 years ago by Sam Buckberry • 0

12 results • Page 1 of 1

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Comment: upstream git branches of bioc-release by TrentonCollier99 • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments. https://bioc-release.r-univ…

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Comment: upstream git branches of bioc-release by Jeroen ▴ 10

OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.

Comment: Large logFC but somewhat high FDR by Gordon Smyth 53k

I don't know what `tp1` is. The relevant histogram would be: ``` hist(fit2$p.value[,"KO_vs_WT"]) ```

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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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