Showing : pileup • reset
0
votes
0
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985
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Pysam pileup and Rsamtools pileup output discrepancy
Pysam pileup Rsamtools RNASeq
2.1 years ago Xinqi • 0
0
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0
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699
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools pileup
2.3 years ago romain.lannes • 0
0
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0
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869
views
How to speed up pileup from Rsamtools?
Rsamtools pileup
2.5 years ago alexandr.gopanenko ▴ 50
0
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0
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808
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Rsamtools pileup help
Rsamtools pileup
2.7 years ago JoeMG • 0
0
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0
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1.1k
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How to get sequence size of insertion/deletion in sam file pileup (e.g. using Rsamtools)
Rsamtools pileup insertion deletion
5.2 years ago madsheilskov ▴ 10
1
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6
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3.2k
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Rsamtools pileup function
Rsamtools pileup number of reads
updated 5.7 years ago by 25k • written 5.7 years ago by ▴ 10
7
votes
2
replies
1.4k
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is the Rsamtools::pileup example broken?
pileup rsamtools
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 70
0
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4
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1.6k
views
pileup function not found (Rsamtools)
rsamtools pileup
9.1 years ago oscar puig • 0
2
votes
1
reply
1.4k
views
inconsistent results from applyPileups and pileLettersAt
Rsamtools GAlignments pileup
updated 9.5 years ago by 25k • written 9.5 years ago by ▴ 10
1
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6
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3.0k
views
different results between Rsamtools::pileup and samtools depth
rsamtools pileup
9.5 years ago TimothéeFlutre ▴ 80
0
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3
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1.9k
views
Rsamtools PileupParam set minimum depth to zero
rsamtools pileup
9.7 years ago komal.rathi ▴ 120
4
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4
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3.0k
views
Perform a pileup on the last nucleotides of each read with variable length reads
pileup rsamtools bam genomicalignments
updated 10.4 years ago by ▴ 180 • written 10.4 years ago by • 0
12 results • Page 1 of 1
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Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Comment: featureCounts -L: high unassigned:mapq fraction by eja.gssssssse.r.m • 0
If you re looking to enjoy a fun mobile experience, the 3 patti vegas game offers a seamless way to play classic card games on your phone. …
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Kevin Blighe ★ 4.0k
Hello Matthew, Thanks for the detailed description-this sounds like a classic challenge in sncRNA analysis, where piRNAs (and other tsRN…
Answer: VariantAnnotation does escape = within header string quotes by Kevin Blighe ★ 4.0k
Hi, Thanks for the minimal reproduction - this is very clear and confirms a bug in `VariantAnnotation::writeVcf()`. The issue is that th…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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