Bioconductor Probe mapping

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limma avereps probe mapping microarray Agilent

updated 4.7 years ago by Gordon Smyth 48k • written 4.7 years ago by wd ▴ 30

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BSgenome biostrings probe mapping

updated 6.4 years ago by holgerbrandl ▴ 10 • written 7.1 years ago by Dario Strbenac ★ 1.5k

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hta20sttranscriptcluster.db probe mapping annotation pd.hta.2.0 annotationdbi

updated 7.0 years ago by James W. MacDonald 63k • written 7.0 years ago by relathman ▴ 20

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

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