Showing : Agilent • reset
0
votes
1
reply
653
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 21 months ago by 50k • written 21 months ago by • 0
0
votes
1
reply
678
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 2.5 years ago by 50k • written 2.5 years ago by • 0
0
votes
7
replies
1.0k
views
Problems with analysing Agilent G3 GEx Rat V2 chips
Agilent limma
2.7 years ago AB • 0
3
votes
1
reply
763
views
Create a '.db' package for agilent
R agilent microarray
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 20
6
votes
4
replies
3.1k
views
AnnotationData Packages for Agilent microarrays
microarray annotation limma .db Agilent
updated 4.6 years ago by 65k • written 4.6 years ago by ▴ 30
1
vote
12
replies
2.2k
views
avereps with probes mapping to multiple genes (Agilent dual color microarray)
limma avereps probe mapping microarray Agilent
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 30
1
vote
2
replies
1.0k
views
covert from RGList to uRNAList
agilent agimicrorna
updated 5.4 years ago by 50k • written 5.4 years ago by ▴ 30
1
vote
2
replies
951
views
Why does backgroundCorrect with method="none" produce different plots with plotMA()?
agilent single channel plotMA background correction
updated 5.9 years ago by 50k • written 5.9 years ago by ▴ 10
3
votes
4
replies
1.2k
views
Agilent Single-Channel Data: Questions about model statement and model building.
limma agilent microarray covariates
updated 6.0 years ago by 50k • written 6.0 years ago by ▴ 10
1
vote
1
reply
1.1k
views
Agilent Data Normalization Result
limma agilent arrayexpress
updated 6.1 years ago by 50k • written 6.1 years ago by • 0
2
votes
11
replies
2.0k
views
Agilent One Channel Data: Will I be able to use limma with flagged data removed.
limma agilent
6.1 years ago CantExitVIM ▴ 10
0
votes
0
replies
782
views
Processing of agilent data
agilent
6.2 years ago Agaz Hussain Wani ▴ 260
0
votes
7
replies
1.8k
views
Help with diff. expression analysis of Agilent files
microarray agilent differential gene expression R
updated 6.9 years ago by ★ 1.0k • written 6.9 years ago by ▴ 30
0
votes
1
reply
1.1k
views
annotation of agillent array G3 Human Gene Expression v3 8x50
microarray annotation agilent
updated 7.2 years ago by 65k • written 7.2 years ago by ▴ 40
3
votes
4
replies
5.0k
views
LIMMA and Agilent single color
Annotation probe limma agilent
13.3 years ago • updated 7.2 years ago Gordon Smyth 50k
0
votes
2
replies
1.3k
views
Right use of model.matrix?
limma agilent microarray lmfit model.matrix
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 10
0
votes
9
replies
2.3k
views
Question about Agilent microarray data measurement
Agilent limma scan.upc microarray
7.4 years ago Maximilian ▴ 10
3
votes
3
replies
3.9k
views
Negative values after normalizing an agilent microarray dataset with limma
limma agilent offset background correction microarray
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 80
3
votes
9
replies
2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.2 years ago Konstantinos Yeles ▴ 80
5
votes
10
replies
1.6k
views
Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
8.2 years ago pm2015 • 0
1
vote
2
replies
1.3k
views
BioMart Attributes/Filters missing
microarray agilent biomart annotation
updated 8.4 years ago by 65k • written 8.4 years ago by • 0
2
votes
3
replies
1.3k
views
how to set design for 2-dye Agilent array experiment with common reference group?
limma 2-dye agilent common reference design
updated 8.4 years ago by 65k • written 8.4 years ago by ★ 3.9k
0
votes
2
replies
1.9k
views
Agilent Data Normalization Method
limma agilent
updated 8.5 years ago by 50k • written 8.5 years ago by • 0
2
votes
1
reply
3.9k
views
Find correct annotation for specific agilent platforms Whole Human Genome Microarray 4x44K
agilent whole Human Genome Microarray 4X44K annotationdbi bioconductor
8.5 years ago Konstantinos Yeles ▴ 80
3
votes
9
replies
1.9k
views
Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 8.6 years ago by 50k • written 8.6 years ago by • 0
2
votes
5
replies
2.0k
views
Problems with "read.agiMicroRna"
read.agiMicroRna agilent limma microarray mirna
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 10
0
votes
2
replies
1.2k
views
microarray agilent data
microarray agilent limma
updated 8.7 years ago by ▴ 130 • written 8.7 years ago by • 0
1
vote
2
replies
2.0k
views
Normalize between Arrays (Agilent two color)
limma agilent
updated 8.8 years ago by 50k • written 8.8 years ago by • 0
0
votes
1
reply
1.1k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 8.8 years ago by ★ 1.0k • written 8.8 years ago by ▴ 320
0
votes
2
replies
2.5k
views
which Agilent annotation db?
agilent annotation
8.9 years ago Frederico Moraes Ferreira ▴ 100
0
votes
3
replies
1.6k
views
problem with update limma - green channel missing
limma bioconductor read.maimages agilent 8x60K
9.1 years ago wd ▴ 30
0
votes
2
replies
1.4k
views
Annotation package for Agilent Human G4110A chip
Agilent annotation
updated 9.2 years ago by 50k • written 16.1 years ago by ★ 1.1k
0
votes
1
reply
1.6k
views
Annotation for Agilent chip DesignID 39494 (one color array)
agilent microarray annotation
updated 9.2 years ago by 50k • written 9.2 years ago by ▴ 150
1
vote
2
replies
2.1k
views
summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.3 years ago by 50k • written 9.3 years ago by ▴ 240
2
votes
2
replies
2.1k
views
Analysing two-channel Agilent microarray data
limma microarray agilent
updated 9.4 years ago by 50k • written 9.4 years ago by • 0
2
votes
4
replies
2.3k
views
a question about input agilent single-channel data to R and analyze
Agilent microarray
updated 9.5 years ago by 50k • written 9.5 years ago by • 0
2
votes
4
replies
3.0k
views
exporting limma log2 data
limma export log2 data agilent
updated 9.5 years ago by 65k • written 9.5 years ago by ▴ 110
37 results • Page 1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
Awards • All
Popular Question to paria.alipour • 0
Popular Question to Eman • 0
Popular Question to James W. MacDonald 65k
Scholar to nhaus ▴ 30
Popular Question to shepherl 3.8k
Locations • All
WEHI, Melbourne, Australia, 5 minutes ago
Macao, 8 minutes ago
France, 11 minutes ago
China, 18 minutes ago
The city by the bay, 26 minutes ago
Traffic: 456 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6