Showing : probe • reset
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frmaTools library error :: makeVectorsAffyBatch() function
Microarray probe frma frmaTools Microarray probe frma frmaTools
updated 12.7 years ago by ▴ 830 • written 12.7 years ago by ▴ 70
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1
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1.4k
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frmaTools library error :: makeVectorsAffyBatch() function
probe frmaTools probe frmaTools
updated 12.7 years ago by ▴ 830 • written 12.7 years ago by ▴ 70
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How do I background correct an Illumina eset without using lumiB
Microarray probe limma PROcess convert beadarray lumi Microarray probe limma PROcess
12.7 years ago Gordon Smyth 53k
0
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1
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1.7k
views
How do I background correct an Illumina eset without using lumiB?
Microarray probe PROcess convert beadarray lumi Microarray probe PROcess convert lumi
updated 12.7 years ago by ▴ 440 • written 12.7 years ago by ★ 13k
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affy plus2 array - unclear probeset signal
probe inveRsion probe inveRsion
12.7 years ago Andrea Grilli ▴ 240
0
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3
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1.5k
views
error when using pdInfoBuilder
Annotation probe Annotation probe
updated 12.7 years ago by 68k • written 12.7 years ago by ★ 13k
0
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1
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1.9k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization hgu133a probe affy PROcess SCAN.UPC Normalization hgu133a probe affy
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 600
0
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1
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1.3k
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Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.7 years ago by ★ 7.2k • written 12.7 years ago by ▴ 50
0
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1.1k
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where can I obtain the package of hugene20st.db
probe annotate probe annotate
12.7 years ago Guannan Sun ▴ 10
0
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1
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909
views
Differences between lmfit model(from limma package) and Illumina-custom Model (from GenomeStudio)
probe limma probe limma
12.8 years ago Gordon Smyth 53k
0
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0
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3.1k
views
ComBat - question about normalization method
Microarray Normalization probe Microarray Normalization probe
12.8 years ago W. Evan Johnson ▴ 870
0
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0
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1.2k
views
NAs introduced by marrayNorm after background subtraction with Limma
Normalization probe limma marray Normalization probe limma marray
12.8 years ago Guest User ★ 13k
0
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0
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1.4k
views
Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe
12.8 years ago Matthew McCall ▴ 830
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2
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1.4k
views
Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray probe Microarray probe
updated 12.8 years ago by ▴ 830 • written 12.8 years ago by ★ 13k
0
votes
6
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1.4k
views
ReportingTools error
probe probe
updated 12.8 years ago by ▴ 160 • written 12.8 years ago by 68k
0
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0
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1.5k
views
lmFit() with ExpressionSet
Annotation probe limma Annotation probe limma
12.8 years ago Gordon Smyth 53k
0
votes
0
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1.1k
views
A question about the gage package
Microarray probe gage Microarray probe gage
12.8 years ago Luo Weijun ★ 1.6k
0
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1
reply
1.2k
views
illimna genes expression file to be imported
probe probe
updated 12.8 years ago by 21k • written 12.8 years ago by ▴ 320
0
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2
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2.9k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 30
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7
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2.4k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
12.8 years ago Jinyan Huang ▴ 110
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2
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1.3k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
updated 12.8 years ago by ▴ 110 • written 12.8 years ago by ★ 4.2k
0
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4
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1.6k
views
GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe Annotation Pathways GO probe
updated 12.8 years ago by ▴ 110 • written 12.8 years ago by ★ 7.2k
0
votes
0
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1.8k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
12.8 years ago Fiona ▴ 70
0
votes
2
replies
1.3k
views
A question about the gage package
Microarray probe gage Microarray probe gage
12.9 years ago He, Yiwen NIH/CIT ▴ 360
0
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0
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969
views
cmarrt.peak function does not work
probe probe
12.9 years ago Susan Wilson ▴ 50
0
votes
3
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1.3k
views
Proper use of annotation package
Annotation probe Annotation probe
12.9 years ago Kamila Naxerova ▴ 100
0
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0
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2.5k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.9 years ago Matthew Thornton ▴ 390
0
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0
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1.0k
views
Help on Illumina HumanHT12 v4 chromosome filtering
probe probe
12.9 years ago Kemal Akat ▴ 120
0
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5
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1.5k
views
options on outputing gene expression based on gene level instead of probe set level for justRMA
probe probe
updated 12.9 years ago by ★ 3.0k • written 12.9 years ago by ▴ 450
0
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1
reply
1.8k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a probe affy SCAN.UPC hgu133a probe affy SCAN.UPC
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by ▴ 600
0
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1
reply
1.1k
views
Difference between number of probes and number of data rows using 'oligo' on Affy miRNA v3.0 arrays
probe PROcess probe PROcess
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 10
0
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0
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1.6k
views
Detecting significant trends in variability
Microarray Preprocessing probe minfi Microarray Preprocessing probe minfi
12.9 years ago Gustavo Fernández Bayón ▴ 440
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2
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1.0k
views
query on variance parameters for RMA
probe probe
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 50
0
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1
reply
2.0k
views
filtering Gene 1.0 ST chips
TimeCourse probe timecourse oligo TimeCourse probe timecourse oligo
updated 13.0 years ago by ▴ 910 • written 13.0 years ago by ▴ 10
0
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2
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1.5k
views
problem with pd.huex.1.0.st.v2 and oligo::getProbeInfo
probe probe
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 110
0
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2
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1.5k
views
LogFC query in Limma
Pathways Cancer probe limma convert Pathways Cancer probe limma convert
updated 13.0 years ago by 53k • written 13.0 years ago by ▴ 130
0
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2
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1.5k
views
Oligo - oligo::probeNames() returns transcript clusters, not probe sets
probe oligo probe oligo
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 120
0
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2
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1.6k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 13.0 years ago by ▴ 540 • written 13.0 years ago by ▴ 110
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1
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1.1k
views
Removal of duplicate probes
probe probe
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 180
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1
reply
1.2k
views
Problems with mapping chromosomal probe locations for illumina probes ?!
probe probe
updated 13.0 years ago by ▴ 50 • written 13.0 years ago by ▴ 90
0
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8
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2.9k
views
vmatchPDict?
BSgenome probe BSgenome BSgenome probe BSgenome
updated 13.1 years ago by 16k • written 13.1 years ago by ▴ 130
0
votes
12
replies
3.0k
views
justRMA?
cdf probe cdf probe
updated 13.1 years ago by 68k • written 13.2 years ago by ▴ 70
0
votes
4
replies
1.9k
views
AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 13.2 years ago by ▴ 120 • written 13.2 years ago by ★ 13k
0
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0
replies
1.0k
views
[ComBat] ComBat outputting NAs with Large Batches - Switch to Log Likelihood
probe probe
13.2 years ago W. Evan Johnson ▴ 870
0
votes
4
replies
1.5k
views
GO Term Enrichment Analysis for ath1121501
Annotation GO ath1121501 probe Annotation GO ath1121501 probe
13.2 years ago Guest User ★ 13k
0
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0
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1.2k
views
Comparing probe intensities between two different Agilent microarrays
probe probe
13.2 years ago Jason Shoemaker ▴ 10
0
votes
1
reply
1.2k
views
Does the X_laevis_2 cdf show X_laevis gen 1 probes?
Xenopus laevis probe affy Xenopus laevis probe affy
updated 13.2 years ago by 68k • written 13.2 years ago by ▴ 10
0
votes
0
replies
1.3k
views
SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
13.2 years ago Guest User ★ 13k
0
votes
3
replies
846
views
extracting a column as a vector.
probe probe
updated 13.2 years ago by 68k • written 13.2 years ago by ★ 13k
0
votes
1
reply
1.9k
views
Annotation using org.At.tair.db package in R
Annotation probe Annotation probe
updated 13.2 years ago by ★ 7.2k • written 13.2 years ago by ★ 13k
1,388 results • Page 4 of 28
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Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
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Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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