Showing : probe • reset
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1.4k
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frmaTools library error :: makeVectorsAffyBatch() function
Microarray probe frma frmaTools Microarray probe frma frmaTools
updated 12.4 years ago by ▴ 830 • written 12.4 years ago by ▴ 70
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1
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1.3k
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frmaTools library error :: makeVectorsAffyBatch() function
probe frmaTools probe frmaTools
updated 12.4 years ago by ▴ 830 • written 12.4 years ago by ▴ 70
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How do I background correct an Illumina eset without using lumiB
Microarray probe limma PROcess convert beadarray lumi Microarray probe limma PROcess
12.5 years ago Gordon Smyth 53k
0
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1
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1.7k
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How do I background correct an Illumina eset without using lumiB?
Microarray probe PROcess convert beadarray lumi Microarray probe PROcess convert lumi
updated 12.5 years ago by ▴ 440 • written 12.5 years ago by ★ 13k
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1.2k
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affy plus2 array - unclear probeset signal
probe inveRsion probe inveRsion
12.5 years ago Andrea Grilli ▴ 240
0
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3
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1.5k
views
error when using pdInfoBuilder
Annotation probe Annotation probe
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
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1
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1.8k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
Normalization hgu133a probe affy PROcess SCAN.UPC Normalization hgu133a probe affy
updated 12.5 years ago by ▴ 20 • written 12.5 years ago by ▴ 600
0
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1
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1.3k
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Add new affy organism platform
Microarray Annotation Organism cdf db0 probe annotate affy Microarray Annotation cdf
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 50
0
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0
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1.0k
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where can I obtain the package of hugene20st.db
probe annotate probe annotate
12.5 years ago Guannan Sun ▴ 10
0
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1
reply
881
views
Differences between lmfit model(from limma package) and Illumina-custom Model (from GenomeStudio)
probe limma probe limma
12.5 years ago Gordon Smyth 53k
0
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0
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3.0k
views
ComBat - question about normalization method
Microarray Normalization probe Microarray Normalization probe
12.5 years ago W. Evan Johnson ▴ 870
0
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0
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1.1k
views
NAs introduced by marrayNorm after background subtraction with Limma
Normalization probe limma marray Normalization probe limma marray
12.6 years ago Guest User ★ 13k
0
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0
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1.3k
views
Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe
12.6 years ago Matthew McCall ▴ 830
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2
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1.3k
views
Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray probe Microarray probe
updated 12.6 years ago by ▴ 830 • written 12.6 years ago by ★ 13k
0
votes
6
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1.4k
views
ReportingTools error
probe probe
updated 12.6 years ago by ▴ 160 • written 12.6 years ago by 68k
0
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0
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1.5k
views
lmFit() with ExpressionSet
Annotation probe limma Annotation probe limma
12.6 years ago Gordon Smyth 53k
0
votes
0
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1.1k
views
A question about the gage package
Microarray probe gage Microarray probe gage
12.6 years ago Luo Weijun ★ 1.6k
0
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1
reply
1.2k
views
illimna genes expression file to be imported
probe probe
updated 12.6 years ago by 21k • written 12.6 years ago by ▴ 320
0
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2
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2.9k
views
[R] Select single probe-set with median expression from multiple probe-sets corresponding to same gene -AFFY
GO probe Biobase genefilter GO probe Biobase genefilter
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 30
0
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7
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2.3k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
12.6 years ago Jinyan Huang ▴ 110
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2
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1.2k
views
Fwd: GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe annotate Annotation Pathways GO probe annotate
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 4.2k
0
votes
4
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1.6k
views
GO terms: Annotation for HumanMethylation450
Annotation Pathways GO probe Annotation Pathways GO probe
updated 12.6 years ago by ▴ 110 • written 12.6 years ago by ★ 7.2k
0
votes
0
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1.7k
views
identifying drosophila miRNA targets
miRNA drosophila2 probe affy convert affycoretools microRNA miRNA drosophila2 probe affy
12.6 years ago Fiona ▴ 70
0
votes
2
replies
1.2k
views
A question about the gage package
Microarray probe gage Microarray probe gage
12.6 years ago He, Yiwen NIH/CIT ▴ 360
0
votes
0
replies
941
views
cmarrt.peak function does not work
probe probe
12.6 years ago Susan Wilson ▴ 50
0
votes
3
replies
1.2k
views
Proper use of annotation package
Annotation probe Annotation probe
12.6 years ago Kamila Naxerova ▴ 100
0
votes
0
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2.5k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.7 years ago Matthew Thornton ▴ 380
0
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0
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970
views
Help on Illumina HumanHT12 v4 chromosome filtering
probe probe
12.7 years ago Kemal Akat ▴ 120
0
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5
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1.4k
views
options on outputing gene expression based on gene level instead of probe set level for justRMA
probe probe
updated 12.7 years ago by ★ 3.0k • written 12.7 years ago by ▴ 450
0
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1
reply
1.7k
views
SCAN-UPC: 12079 of 22283 probes returned for hgu133a CELs?
hgu133a probe affy SCAN.UPC hgu133a probe affy SCAN.UPC
updated 12.7 years ago by ▴ 20 • written 12.7 years ago by ▴ 600
0
votes
1
reply
1.1k
views
Difference between number of probes and number of data rows using 'oligo' on Affy miRNA v3.0 arrays
probe PROcess probe PROcess
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 10
0
votes
0
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1.6k
views
Detecting significant trends in variability
Microarray Preprocessing probe minfi Microarray Preprocessing probe minfi
12.7 years ago Gustavo Fernández Bayón ▴ 440
0
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2
replies
977
views
query on variance parameters for RMA
probe probe
updated 12.7 years ago by 68k • written 12.7 years ago by ▴ 50
0
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1
reply
2.0k
views
filtering Gene 1.0 ST chips
TimeCourse probe timecourse oligo TimeCourse probe timecourse oligo
updated 12.7 years ago by ▴ 910 • written 12.7 years ago by ▴ 10
0
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2
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1.5k
views
problem with pd.huex.1.0.st.v2 and oligo::getProbeInfo
probe probe
updated 12.7 years ago by ★ 4.3k • written 12.7 years ago by ▴ 110
0
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2
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1.5k
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LogFC query in Limma
Pathways Cancer probe limma convert Pathways Cancer probe limma convert
updated 12.8 years ago by 53k • written 12.8 years ago by ▴ 130
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2
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1.5k
views
Oligo - oligo::probeNames() returns transcript clusters, not probe sets
probe oligo probe oligo
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 120
0
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2
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1.5k
views
BiomaRt: getLDS keeps returning NULL
mouse4302 probe affy biomaRt mouse4302 probe affy biomaRt
updated 12.8 years ago by ▴ 540 • written 12.8 years ago by ▴ 110
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1
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1.1k
views
Removal of duplicate probes
probe probe
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 180
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1
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1.1k
views
Problems with mapping chromosomal probe locations for illumina probes ?!
probe probe
updated 12.8 years ago by ▴ 50 • written 12.8 years ago by ▴ 90
0
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8
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2.8k
views
vmatchPDict?
BSgenome probe BSgenome BSgenome probe BSgenome
updated 12.9 years ago by 16k • written 12.9 years ago by ▴ 130
0
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12
replies
2.9k
views
justRMA?
cdf probe cdf probe
updated 12.9 years ago by 68k • written 12.9 years ago by ▴ 70
0
votes
4
replies
1.9k
views
AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 12.9 years ago by ▴ 120 • written 12.9 years ago by ★ 13k
0
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0
replies
1.0k
views
[ComBat] ComBat outputting NAs with Large Batches - Switch to Log Likelihood
probe probe
12.9 years ago W. Evan Johnson ▴ 870
0
votes
4
replies
1.4k
views
GO Term Enrichment Analysis for ath1121501
Annotation GO ath1121501 probe Annotation GO ath1121501 probe
13.0 years ago Guest User ★ 13k
0
votes
0
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1.1k
views
Comparing probe intensities between two different Agilent microarrays
probe probe
13.0 years ago Jason Shoemaker ▴ 10
0
votes
1
reply
1.1k
views
Does the X_laevis_2 cdf show X_laevis gen 1 probes?
Xenopus laevis probe affy Xenopus laevis probe affy
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 10
0
votes
0
replies
1.3k
views
SNP6.0 annotation
SNP Annotation probe annotate SIM SNP Annotation probe annotate SIM
13.0 years ago Guest User ★ 13k
0
votes
3
replies
813
views
extracting a column as a vector.
probe probe
updated 13.0 years ago by 68k • written 13.0 years ago by ★ 13k
0
votes
1
reply
1.8k
views
Annotation using org.At.tair.db package in R
Annotation probe Annotation probe
updated 13.0 years ago by ★ 7.2k • written 13.0 years ago by ★ 13k
1,388 results • Page 4 of 28
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I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…
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Enter the world of Monkey Mart, where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trad…
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Enter the world of , where gaming meets innovation. We've created a cutting-edge marketplace that's transforming how gamers trade and conne…
Comment: copy number/LOH for Affy 100K by igkryycpinmshzugby • 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
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