Showing : probe • reset
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947
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within chip probe replicates, Agilent chips
probe limma probe limma
updated 13.3 years ago by ★ 3.0k • written 13.3 years ago by 68k
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638
views
within chip probe replicates, Agilent chips
probe limma probe limma
13.3 years ago Reed, Tyler ▴ 10
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3
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1.7k
views
Annotation using the affy package
GO probe affy GO probe affy
updated 13.3 years ago by 68k • written 13.3 years ago by ★ 13k
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3
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1.7k
views
mouse4302.db and can't find gene symbol annotation
Annotation mouse4302 probe Annotation mouse4302 probe
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 350
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1.9k
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450K annotation: discrepancy between GEO GPL and Bioconductor annotation
Annotation db0 probe annotate PROcess GenomicFeatures GenomicRanges Annotation db0 probe
13.3 years ago Marc Carlson ★ 7.2k
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1.0k
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limma for finding differentialy expressed genes of several groups
probe limma probe limma
13.3 years ago Sean Davis 21k
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2
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1.4k
views
retrieve expression of all probes in the probe set
hgu133a probe hgu133a probe
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 240
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1
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1.2k
views
Annotation databases--unable to get annotations
Annotation GO hgu95av2 probe limma Annotation GO hgu95av2 probe limma
updated 13.3 years ago by 68k • written 13.3 years ago by ★ 13k
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4
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2.1k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 13.3 years ago by 6.7k • written 13.3 years ago by ★ 13k
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1
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1.3k
views
AnnotationDBI
GO ChipName probe affy GO ChipName probe affy
updated 13.4 years ago by 68k • written 13.4 years ago by ★ 13k
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0
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857
views
shorth function and Affymetrix Hugene
Normalization probe Normalization probe
13.4 years ago Juan Fernández Tajes ▴ 190
0
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1.1k
views
Encrypting IDAT files using IDATreader
Genetics probe Genetics probe
13.4 years ago Mark Cowley ▴ 910
0
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3
replies
1.7k
views
package xps: export.filter issues
Annotation probe xps Annotation probe xps
updated 13.4 years ago by ★ 3.9k • written 13.5 years ago by ▴ 90
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2
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6.1k
views
distance to TSS upstream/downstream
probe probe
updated 13.5 years ago by ★ 11k • written 13.5 years ago by ▴ 150
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2
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708
views
GPL2893 and GPL875 probe Sequnces
probe probe
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 570
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1.0k
views
(no subject)
Clustering probe limma GLAD Clustering probe limma GLAD
13.5 years ago Gordon Smyth 53k
0
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2
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1.0k
views
package xps HG-U133-PLUS_probe.tab / .psi
probe probe
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 90
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2
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1.8k
views
Limma, arrayWeights and fold change
probe limma probe limma
updated 13.5 years ago by ▴ 1000 • written 13.5 years ago by ▴ 50
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2.9k
views
Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization probe oligo frma frmaTools Normalization probe oligo frma frmaTools
13.5 years ago Schott, Johanna ▴ 20
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1
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1.4k
views
Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization probe frma frmaTools Normalization probe frma frmaTools
updated 13.5 years ago by 68k • written 13.5 years ago by ★ 13k
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1
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1.1k
views
LIMMA -- obtaining values used to calculate lfc
probe annotate probe annotate
updated 13.5 years ago by 68k • written 13.5 years ago by ★ 13k
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9
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2.1k
views
Testing for no difference
probe probe
updated 13.5 years ago by ▴ 70 • written 13.5 years ago by ▴ 440
0
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0
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1.3k
views
How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
13.6 years ago Yoo, Seungyeul ▴ 110
0
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2
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1.9k
views
ReadVcf Memory Issues
Annotation probe Annotation probe
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 40
0
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7
replies
3.1k
views
obtain the chromosome position/coordinates for probes on Affymetrix Human Exon 1.0 array
Alignment probe Alignment probe
updated 13.6 years ago by 68k • written 13.6 years ago by ★ 1.0k
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3
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1.0k
views
regenerate CEL file from analyzed data
probe probe
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ▴ 20
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1
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2.0k
views
Error: Re: Annotation Database for Agilent 8x60K Human Gene Expression Arrays
Annotation probe affy AnnotationDbi Agi4x44PreProcess Annotation probe affy AnnotationDbi
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 200
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0
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1.5k
views
Affymetrix GeneChip Human Promoter 1.0R Array
probe probe
13.6 years ago Alla Bulashevska ▴ 60
1
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1
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1.2k
views
Illumine bead array PROBE_TYPE values
Annotation probe Annotation probe
updated 13.6 years ago by ★ 6.6k • written 13.6 years ago by ▴ 360
0
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1
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1.4k
views
oligo: ordering of \"backgroundCorrect\" and \"normalize\" output values
Normalization Preprocessing probe oligo Normalization Preprocessing probe oligo
updated 13.6 years ago by ★ 4.3k • written 13.6 years ago by ★ 13k
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3
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2.1k
views
Non-Specific Filtering with "nsFilter" Question
probe genefilter PROcess probe genefilter PROcess
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 160
0
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12
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3.0k
views
Newbie methylation and stats question
probe ASSIGN probe ASSIGN
updated 13.6 years ago by ★ 4.2k • written 13.6 years ago by ▴ 440
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0
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768
views
Question about lumiMethyN() in lumi package
probe lumi probe lumi
13.7 years ago Pan Du ▴ 440
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2
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1.4k
views
Question about locked environments
cdf probe cdf probe
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 2.0k
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2
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1.1k
views
remove.dupEntrez from nsFilter{genefilter}
probe probe
updated 13.7 years ago by 25k • written 13.7 years ago by ★ 13k
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1
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4.5k
views
File format for single channel analysis of Agilent microarray data with Limma?
Microarray probe Microarray probe
updated 13.7 years ago by ▴ 40 • written 13.7 years ago by 53k
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1.2k
views
how to rank affy probesets by their probe-effect magnitude
probe affy RPA probe affy RPA
13.7 years ago Leo Lahti ▴ 40
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11
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1.9k
views
error running makeProbePackage
Microarray probe Microarray probe
updated 13.7 years ago by 68k • written 13.7 years ago by ▴ 80
0
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3
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2.2k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Annotation Normalization GO probe genefilter affy limma oligo Microarray GO
updated 13.8 years ago by ▴ 190 • written 13.8 years ago by 68k
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1
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1.4k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Normalization probe genefilter limma oligo Microarray Normalization probe
updated 13.8 years ago by 68k • written 13.8 years ago by ▴ 190
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2
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2.0k
views
minfi -- now what?
probe minfi probe minfi
updated 13.8 years ago by ★ 4.2k • written 13.8 years ago by ▴ 230
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1
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904
views
Subtraction of Healthy control average from treatment averages
probe probe
updated 13.8 years ago by 21k • written 13.8 years ago by ▴ 50
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6
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1.3k
views
pm summarization method
probe probe
13.8 years ago Assa Yeroslaviz ★ 1.5k
0
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4
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4.3k
views
exprs() in Bioc 2.10
probe affy oligo probe affy oligo
updated 13.8 years ago by ★ 4.3k • written 13.8 years ago by ▴ 30
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0
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778
views
extract intensity values from AffyBatch
probe probe
13.8 years ago Assa Yeroslaviz ★ 1.5k
0
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1
reply
1.2k
views
read.ilmn Error in 'colnames<-'...
probe probe
updated 13.8 years ago by ★ 3.6k • written 13.8 years ago by ▴ 10
0
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0
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1.6k
views
Illumina beadarray analysis with lumi
Normalization Preprocessing probe PROcess beadarray lumi Normalization Preprocessing probe
13.8 years ago Ahmet ZEHIR ▴ 50
0
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0
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1.0k
views
Question about Infinium Methylation normalization using lumi package
Normalization probe lumi Normalization probe lumi
13.8 years ago Pan Du ▴ 440
0
votes
0
replies
720
views
Doubt/Help - Microarray in R 2.12.2
probe probe
13.8 years ago Vinicius Ribeiro ▴ 10
0
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3
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1.5k
views
some questions about lumi package and Illumina arrays
Normalization probe limma lumi Normalization probe limma lumi
updated 13.9 years ago by ★ 3.6k • written 13.9 years ago by ▴ 840
1,388 results • Page 5 of 28
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Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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