Showing : probe • reset
0
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0
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4.5k
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Limma for DNA methylation arrays?
Normalization probe limma minfi Normalization probe limma minfi
12.2 years ago Gustavo Fernández Bayón ▴ 440
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votes
4
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2.9k
views
Limma, blocking, robust methods, and paired samples question
Microarray probe Microarray probe
updated 12.2 years ago by 53k • written 12.2 years ago by ▴ 440
0
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0
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1.5k
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Questions regarding 'specond' r-program library package
Kidney Lung Prostate probe SpeCond Kidney Lung Prostate probe SpeCond
12.2 years ago Florence Cavalli ▴ 50
0
votes
3
replies
1.3k
views
Cross map two different probe set IDs
probe probe
updated 12.2 years ago by ★ 4.2k • written 12.2 years ago by ▴ 190
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1.8k
views
limma duplicateCorrelation - unbalanced paired design
probe probe
12.2 years ago sbcn ▴ 80
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0
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1.4k
views
Farms/Call.INI using oligo package?
probe affy oligo SIM farms probe affy oligo SIM farms
12.2 years ago Djork Clevert ▴ 210
3
votes
5
replies
2.2k
views
Farms/Call.INI using oligo package?
probe affy oligo farms probe affy oligo farms
updated 12.2 years ago by ▴ 210 • written 12.2 years ago by ▴ 270
0
votes
1
reply
957
views
Probe Set IDs and Gene Names for Human Gene 1.1 ST array
probe probe
updated 12.2 years ago by 68k • written 12.2 years ago by ▴ 10
0
votes
3
replies
2.3k
views
Summarisation in oligo package after exclusion of probes containing SNPs
probe affy oligo probe affy oligo
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ★ 13k
0
votes
1
reply
2.7k
views
affy - Anotation of Afymetrix PrimeView chipe
cdf probe affy limma cdf probe affy limma
updated 12.3 years ago by 68k • written 12.3 years ago by ▴ 10
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0
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1.0k
views
Illumina spike-in probe sequences, lumi
Annotation probe Annotation probe
12.3 years ago Rohmatul Fajriyah ▴ 190
0
votes
2
replies
5.6k
views
Normalization before ComBat
Microarray Normalization probe affy frma Microarray Normalization probe affy frma
updated 12.3 years ago by ▴ 40 • written 12.3 years ago by ▴ 870
0
votes
2
replies
2.0k
views
limma_3.17.23 - missing ILMN identifiers in EList objects after read.ilmn
Annotation Normalization GO probe annotate Annotation Normalization GO probe annotate
updated 12.3 years ago by ★ 3.6k • written 12.3 years ago by ▴ 120
0
votes
0
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1.1k
views
variation between chips - neqc()
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
12.3 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
941
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation probe Annotation probe
12.3 years ago Nitesh Turaga ▴ 50
0
votes
2
replies
4.0k
views
topGO issues
Annotation GO probe Annotation GO probe
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ★ 13k
0
votes
1
reply
1.7k
views
Error using makeDBPackage() from AnnotationForge package
Annotation probe AnnotationForge Annotation probe AnnotationForge
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 80
0
votes
3
replies
4.3k
views
How to deal with Affymetrix probe that map to multiple genes
GO Clustering probe convert GO Clustering probe convert
12.4 years ago Gundala Viswanath ▴ 230
0
votes
0
replies
2.7k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
12.4 years ago Sarah JugurnauthLittle ▴ 20
0
votes
0
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784
views
Error while background correction
GO probe GO probe
12.4 years ago kunal jha ▴ 10
0
votes
0
replies
2.6k
views
makeTranscriptDbFromGFF fails on NCBI Bacteria
Alignment Annotation Normalization GO Preprocessing Clustering Cancer Organism probe GLAD
12.4 years ago Sarah Pohl ▴ 30
0
votes
1
reply
2.5k
views
Control probe QC plots for Infinium 450k chips (lumi, minfi...)
Annotation probe lumi minfi Annotation probe lumi minfi
updated 12.4 years ago by ★ 4.2k • written 12.4 years ago by ▴ 90
0
votes
2
replies
2.2k
views
Reading Illumina data from GenomeStudio in limma
probe lumi probe lumi
updated 12.4 years ago by ★ 3.6k • written 12.5 years ago by ★ 13k
0
votes
1
reply
910
views
RMA probe summarization when sizes of probesets are unequal
Microarray Normalization probe oligo Microarray Normalization probe oligo
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
8
replies
3.4k
views
Affy: probeset to gene expression with expresso
probe affy probe affy
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 50
1
vote
4
replies
5.1k
views
[topGO] More flexible way to select 'interesting' genes
GO probe topGO GO probe topGO
updated 12.5 years ago by ▴ 400 • written 12.5 years ago by ▴ 680
0
votes
0
replies
1.5k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
12.5 years ago Guest User ★ 13k
0
votes
2
replies
2.1k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 12.5 years ago by ▴ 240 • written 12.5 years ago by ★ 1.1k
0
votes
1
reply
932
views
issue on removing all NAs (UNANNOTATED) rows
probe limma probe limma
updated 12.5 years ago by 68k • written 12.5 years ago by ★ 13k
0
votes
0
replies
861
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation probe Annotation probe
12.5 years ago Levi Waldron ★ 1.1k
0
votes
0
replies
874
views
How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation probe Annotation probe
12.5 years ago Feng Tian ▴ 110
0
votes
0
replies
918
views
maskBAD package - Errors during creation of mask
Microarray probe maskBAD Microarray probe maskBAD
12.5 years ago Ron Rotkopf ▴ 10
0
votes
4
replies
2.3k
views
DexSeq extracols option
RNASeq Microarray Genetics Annotation Normalization Infrastructure Cancer probe limma
updated 12.5 years ago by ★ 1.9k • written 12.5 years ago by ▴ 40
0
votes
1
reply
650
views
Prolems with AraGene 1_1 annotation
Annotation GO cdf probe Annotation GO cdf probe
updated 12.5 years ago by 68k • written 12.5 years ago by ▴ 10
0
votes
2
replies
1.6k
views
limma for homemade microarray - question on NAs and multiple probes for one gene
Microarray Normalization GO Network Cancer probe limma Microarray Normalization GO probe
updated 12.5 years ago by 53k • written 12.6 years ago by ★ 3.0k
0
votes
14
replies
4.0k
views
pd.hugene.2.0.st missing normgene->exon mappings
Cancer probe Cancer probe
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 910
0
votes
5
replies
2.1k
views
Illumina Probe_ID used in the LIMMA package for neqc function
Microarray Annotation Normalization Clustering probe limma Microarray Annotation probe
updated 12.6 years ago by ▴ 40 • written 12.6 years ago by ★ 3.6k
0
votes
2
replies
2.8k
views
Disparity between MethylLumiSet (methylumi) and RGChannelSet (minfi) - treatment of missing values
probe methylumi probe methylumi
updated 12.6 years ago by ★ 6.5k • written 12.6 years ago by ▴ 20
0
votes
4
replies
1.9k
views
read.ilmn() and variation between chips
Microarray Normalization probe limma Microarray Normalization probe limma
updated 12.6 years ago by 53k • written 12.6 years ago by ▴ 550
0
votes
1
reply
2.4k
views
Illumina Probe_ID used in the LIMMA package for neqc function
Microarray Annotation probe limma Microarray Annotation probe limma
updated 12.6 years ago by ★ 3.6k • written 12.6 years ago by ▴ 40
0
votes
2
replies
2.4k
views
Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 12.6 years ago by 16k • written 12.6 years ago by ▴ 40
0
votes
0
replies
770
views
sample probe profile or sample gene profile
Microarray probe Microarray probe
12.6 years ago Guest User ★ 13k
0
votes
0
replies
1.1k
views
illumina microarray analysis questions (limma and heatmap)
Microarray Normalization probe limma Microarray Normalization probe limma
12.6 years ago Rao,Xiayu ▴ 550
0
votes
4
replies
2.2k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 12.6 years ago by ★ 4.3k • written 12.6 years ago by ▴ 140
2
votes
4
replies
3.3k
views
makePdInfoPackage for Primeview arrays
BiocViews Annotation Cancer Organism cdf probe affy biocViews BiocViews BiocViews Cancer
updated 12.6 years ago by ★ 3.9k • written 12.6 years ago by ▴ 140
1
vote
4
replies
8.1k
views
How is LIMMA actually calculating the average expression value
probe limma gcrma probe limma gcrma
updated 12.6 years ago by ▴ 150 • written 12.6 years ago by 53k
0
votes
1
reply
848
views
could not find function "makeProbePackage"
cdf probe cdf probe
updated 12.6 years ago by 68k • written 12.6 years ago by ▴ 10
0
votes
0
replies
1.1k
views
Error while executing ComBat from sva library in bioconductor
probe sva probe sva
12.6 years ago W. Evan Johnson ▴ 870
0
votes
2
replies
1.5k
views
first time using combat
probe sva probe sva
updated 12.7 years ago by ▴ 10 • written 12.7 years ago by ▴ 870
0
votes
1
reply
1.0k
views
using beadarray or limma without spatial information
Microarray probe Microarray probe
updated 12.7 years ago by ★ 3.6k • written 12.7 years ago by ★ 13k
1,388 results • Page 3 of 28
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