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quantro
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should smooth quantile normalization be used with limma-voom?
limma-voom
smooth-quantile-normalization
quantro
21 months ago
raf4
▴ 20
4
votes
14
replies
1.5k
views
Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
quantro
RNASeq
updated 3.9 years ago by
Stephanie Hicks
▴ 80 • written 4.0 years ago by
raf4
▴ 20
0
votes
1
reply
721
views
Hope for help about quantro and qsmooth-library size normalization
normalization
quantro
q'smooth
library size normalization
4.8 years ago
Apr
• 0
2
votes
4
replies
3.6k
views
DESeq2- Size factors (median of ratios) assumptions - global adjustment normalization?
deseq2
quantro
normalization
5.6 years ago
Victor Barrera
• 0
4 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
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