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quantro
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should smooth quantile normalization be used with limma-voom?
limma-voom
smooth-quantile-normalization
quantro
21 months ago
raf4
▴ 20
4
votes
14
replies
1.5k
views
Application of quantro to RNASeq: I do not get the same results as are in the quantro paper supplement
quantro
RNASeq
updated 3.9 years ago by
Stephanie Hicks
▴ 80 • written 4.0 years ago by
raf4
▴ 20
0
votes
1
reply
721
views
Hope for help about quantro and qsmooth-library size normalization
normalization
quantro
q'smooth
library size normalization
4.8 years ago
Apr
• 0
2
votes
4
replies
3.6k
views
DESeq2- Size factors (median of ratios) assumptions - global adjustment normalization?
deseq2
quantro
normalization
5.6 years ago
Victor Barrera
• 0
4 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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