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Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
DESeq2
raw
updated 3.0 years ago by
swbarnes2
★ 1.4k • written 3.0 years ago by
Hicham
▴ 10
0
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1.1k
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr
raw
Agilent
MicroarrayData
import
updated 4.1 years ago by
Gordon Smyth
53k • written 4.1 years ago by
irina.st.louis4
• 0
3
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2.9k
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Processing RAW CEL files from GEO
CEL
RAW
geoquery
readaffy
updated 11.1 years ago by
Sean Davis
21k • written 11.1 years ago by
PyPer
▴ 20
3 results • Page
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Kevin Blighe
★ 4.0k
There are alternative explanations for why these samples are so similar. The similarity could result from low biological variability in gen…
Comment: Post translational modifications and phosphoproteomics in limpa?
by
james.eapen
• 0
Thank you!
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
ATpoint
★ 5.0k
The donor effect is crystal clear, and absent in these suspicious samples. It strongly argues for a technical problem. If you really need s…
Answer: mzR-Rcpp compiler version issue
by
Laurent Gatto
1.6k
There are two issues here. First, a warning about mzR, that you can safely ignore. It tells you that mzR was compiled using a different …
Comment: Identifying differentially expressed genes in individual samples from a large co
by
jamie.gearing
▴ 60
Great. Yes, something descriptive is probably good enough, even if the p-values themselves are not so rigorous. Thanks very much Gordon!
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Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Identifying differentially expressed genes in individual samples from a large co
Answer: Identifying differentially expressed genes in individual samples from a large co
Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction
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