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Is it possible to convert "DESeq2's normalized counts" to "DEGs"?
DESeq2
raw
updated 2.5 years ago by
swbarnes2
★ 1.4k • written 2.5 years ago by
Hicham
▴ 10
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998
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Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr
raw
Agilent
MicroarrayData
import
updated 3.5 years ago by
Gordon Smyth
52k • written 3.5 years ago by
irina.st.louis4
• 0
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Processing RAW CEL files from GEO
CEL
RAW
geoquery
readaffy
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
PyPer
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Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Geoff
• 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Comment: cannot download atena annotation for human
by
Davide
• 0
Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …
Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove
by
macdonaldfrench7286566
• 0
Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…
Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an
by
Kateřina
• 0
I unfortunately haven't. Non-tidy grammar is fine, but I have wanted to use tidy-only grammar. Thank you nonetheless!
Comment: GAlignments Cigar to GRanges
by
pineiroalejandro
• 0
Wow, so easy! Thanks for your quick reply.
Votes
Answer: GAlignments Cigar to GRanges
Answer: GAlignments Cigar to GRanges
When running contrasts, does it use normalized read counts?
When running contrasts, does it use normalized read counts?
Importing Salmon counts with tximport with host and virus genomes
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