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read counting
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reset
1
vote
12
replies
3.8k
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Problem with summarizeOverlaps function
genomicalignments
read counting
8.7 years ago
kgorczak
▴ 10
4
votes
3
replies
2.9k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps
rnaseq
bplapply
rangedsummarizedexperiment
read counting
7.8 years ago
ErickF
▴ 40
1
vote
4
replies
2.0k
views
Gviz sashimi read count
Gviz
sashimi
sashimi plots
read counting
bam
updated 7.2 years ago by
Robert Ivanek
▴ 730 • written 7.2 years ago by
bernt.popp
• 0
1
vote
4
replies
2.0k
views
DiffBind error with dba.count after update
diffbind
read counting
warning message
chromatin
atac-seq
updated 6.5 years ago by
Gord Brown
▴ 650 • written 6.5 years ago by
tgjohnst
• 0
0
votes
1
reply
1.1k
views
featureCounts : limits on multioverlap (option -O)
featurecounts
read counting
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
marc.gabriel.01
• 0
3
votes
2
replies
961
views
counting the sequencing reads in 10kb regions on a genome-wide scale
read counting
CNV
rsamtools
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
Bogdan
▴ 670
6 results • Page
1 of 1
Recent ...
Replies
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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