Bioconductor Read.maimages

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limma read.maimages normalization preprocessing

updated 7.8 years ago by Gordon Smyth 53k • written 7.8 years ago by marviedemit ▴ 10

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limma read.maimages

updated 8.0 years ago by Gordon Smyth 53k • written 18.9 years ago by Lakshmanan Iyer ▴ 250

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differential gene expression limma read.maimages

updated 10.4 years ago by Gordon Smyth 53k • written 10.4 years ago by SSK ▴ 10

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limma bioconductor read.maimages agilent 8x60K

10.6 years ago wd ▴ 30

4 results • Page 1 of 1

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Comment: PCA subset of genes vs DE by Ben • 0

PCA evaluates separation according to your input. The subset of genes you used may be entirely identical in terms of expression, indicatin…

Comment: Problem with MakeTxDbFromGFF by Ben • 0

Wow can't believe he can really answer this [speed stars][1] [1]: https://speed-stars.co

Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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