Bioconductor Readaffy

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2.0k

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affycoretools ReadAffy Biobase phenoData affy

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by bastien_chassagnol • 0

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975

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affyio.rdb ReadAffy

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by na396 • 0

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3.3k

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readaffy frma affy package installation hgu133a

7.7 years ago Chris Mancuso • 0

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4.9k

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affy normalization affymetrix limma Readaffy

10.2 years ago florent.dumont • 0

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2.9k

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CEL RAW geoquery readaffy

updated 11.1 years ago by Sean Davis 21k • written 11.1 years ago by PyPer ▴ 20

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Comment: p.adjust BH Question by TikTsoksocissalpc • 0

Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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