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readvcfasvranges
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0
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4
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2.7k
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How to import vcf with multi sample?
vcf
readvcf
readvcfasvranges
8.3 years ago
Marcin Grzybowski
• 0
2
votes
3
replies
2.2k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
9.2 years ago
summerela
• 0
4
votes
4
replies
2.0k
views
readVcfAsVRanges + FilterRules
variantannotation
filterVcf
readvcfasvranges
filterRules
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
Sigve Nakken
▴ 50
2
votes
4
replies
1.9k
views
Best way to create a VRanges object from a large VCF file?
variantannotation
readvcf
readvcfasvranges
vcf
updated 7.3 years ago by
Michael Lawrence
★ 11k • written 7.3 years ago by
ruben.drews
• 0
1
vote
2
replies
1.6k
views
Trouble while concatenating VRanges object ()
somaticsignatures
somaticsignatures package
readvcfasvranges
vranges
6.7 years ago • updated 6.6 years ago
guillaume.dachy
• 0
1
vote
2
replies
1.5k
views
Combining GRange/VRange objects
granges
vranges
readvcfasvranges
somaticsignatures
updated 8.1 years ago by
Michael Lawrence
★ 11k • written 8.1 years ago by
jpluta26
• 0
2
votes
2
replies
1.3k
views
readVCFAsVRanges in VariantAnnotation broken by an FTZ format?
variantannotation
readvcfasvranges
vcf
updated 7.8 years ago by
Michael Lawrence
★ 11k • written 7.8 years ago by
Andy Lynch
▴ 120
0
votes
2
replies
1.1k
views
vcf to vranges
readvcfasvranges
vcf to vranges
updated 7.8 years ago by
Valerie Obenchain
★ 6.8k • written 7.8 years ago by
arsala521
▴ 10
0
votes
0
replies
724
views
Formal class VRanges versus Large VRanges
somaticsignatures
vranges
readvcfasvranges
5.7 years ago
guillaume.dachy
• 0
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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