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Showing :
resultsNames
•
reset
0
votes
8
replies
1.8k
views
DESeq2 coefficient names
resultsNames
DESeq2
coefficient
3.0 years ago
Jane
▴ 10
1
vote
7
replies
9.0k
views
DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2
DESeq2
resultsNames
6.8 years ago
davichen
▴ 10
0
votes
5
replies
701
views
Unexpected results
resultsNames
DESeq2
written 3.3 years ago by
efratsh
▴ 10
0
votes
4
replies
3.3k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2
rnaseq
resultsnames
7.0 years ago
zeynep.nenseth
• 0
2
votes
4
replies
4.0k
views
DESeq results names when using interaction terms
DESeq
deseq2
resultsnames
7.8 years ago
akaever
▴ 30
4
votes
4
replies
2.0k
views
How to handle the change in resultsNames() for DESeq2 ?
deseq2
resultsnames
multifactorial design
updated 7.9 years ago by
Michael Love
41k • written 7.9 years ago by
Ira
▴ 10
0
votes
3
replies
907
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise
deseq2
extracting contrasts
resultsnames
results deseq2
updated 5.4 years ago by
Michael Love
41k • written 5.4 years ago by
Ricardo Rodrigues
• 0
1
vote
3
replies
993
views
resultsNames(dds) not showing all contrasts
DESeq2
resultsNames
lfcShrink
updated 20 months ago by
ATpoint
★ 4.0k • written 20 months ago by
eve.olszanowski
• 0
0
votes
2
replies
1.1k
views
Discrepancy in extracting contrasts
deseq2
resultsnames
batch effect
contrast
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
pkachroo
▴ 10
0
votes
1
reply
1.2k
views
resultnames(dds) not giving correct output
deseq2
resultsnames
updated 6.8 years ago by
Michael Love
41k • written 6.8 years ago by
mrigaya.mehra
▴ 10
0
votes
1
reply
2.9k
views
DESeq2 releveling not changing resultsNames options
deseq2
relevel
resultsNames
multifactorial design
updated 8.2 years ago by
Michael Love
41k • written 8.2 years ago by
rclaire
▴ 20
11 results • Page
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1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
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Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
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For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
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ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
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41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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