Showing : resultsnames • reset
1
vote
3
replies
993
views
resultsNames(dds) not showing all contrasts
DESeq2 resultsNames lfcShrink
updated 20 months ago by ★ 4.0k • written 20 months ago by • 0
0
votes
8
replies
1.8k
views
DESeq2 coefficient names
resultsNames DESeq2 coefficient
3.0 years ago Jane ▴ 10
0
votes
5
replies
701
views
Unexpected results
resultsNames DESeq2
written 3.3 years ago by ▴ 10
0
votes
3
replies
906
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise deseq2 extracting contrasts resultsnames results deseq2
updated 5.4 years ago by 41k • written 5.4 years ago by • 0
0
votes
2
replies
1.1k
views
Discrepancy in extracting contrasts
deseq2 resultsnames batch effect contrast
updated 6.5 years ago by 41k • written 6.5 years ago by ▴ 10
1
vote
7
replies
9.0k
views
DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2 DESeq2 resultsNames
6.8 years ago davichen ▴ 10
0
votes
1
reply
1.2k
views
resultnames(dds) not giving correct output
deseq2 resultsnames
updated 6.8 years ago by 41k • written 6.8 years ago by ▴ 10
0
votes
4
replies
3.3k
views
DESeq2 extracting results: resultsNames does not show the expected output
deseq2 rnaseq resultsnames
7.0 years ago zeynep.nenseth • 0
2
votes
4
replies
4.0k
views
DESeq results names when using interaction terms
DESeq deseq2 resultsnames
7.8 years ago akaever ▴ 30
4
votes
4
replies
2.0k
views
How to handle the change in resultsNames() for DESeq2 ?
deseq2 resultsnames multifactorial design
updated 7.9 years ago by 41k • written 7.9 years ago by ▴ 10
0
votes
1
reply
2.9k
views
DESeq2 releveling not changing resultsNames options
deseq2 relevel resultsNames multifactorial design
updated 8.2 years ago by 41k • written 8.2 years ago by ▴ 20
11 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 30
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards • All
Popular Question to Leo Lahti ▴ 30
Scholar to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Scholar to Michael Love 41k
Supporter to JKim • 0
Locations • All
Melbourne, Australia, 2 minutes ago
WEHI, Melbourne, Australia, 6 minutes ago
France, 12 minutes ago
Finland, 1 hour ago
Canada, 1 hour ago
Traffic: 793 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6