Showing : resultsnames • reset
1
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3
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994
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resultsNames(dds) not showing all contrasts
DESeq2 resultsNames lfcShrink
updated 20 months ago by ★ 4.0k • written 20 months ago by • 0
0
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8
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1.8k
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DESeq2 coefficient names
resultsNames DESeq2 coefficient
3.0 years ago Jane ▴ 10
0
votes
5
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701
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Unexpected results
resultsNames DESeq2
written 3.3 years ago by ▴ 10
0
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3
replies
907
views
Pairwise comparisons for "both between and within subject"experiment using DESeq2
pairwise deseq2 extracting contrasts resultsnames results deseq2
updated 5.4 years ago by 41k • written 5.4 years ago by • 0
0
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2
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1.1k
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Discrepancy in extracting contrasts
deseq2 resultsnames batch effect contrast
updated 6.6 years ago by 41k • written 6.6 years ago by ▴ 10
0
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1
reply
1.2k
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resultnames(dds) not giving correct output
deseq2 resultsnames
updated 6.8 years ago by 41k • written 6.8 years ago by ▴ 10
1
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7
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9.0k
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DESeq2 resultsNames(dds) not giving the right comparisons?.
deseq2 DESeq2 resultsNames
6.8 years ago davichen ▴ 10
0
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4
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3.3k
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DESeq2 extracting results: resultsNames does not show the expected output
deseq2 rnaseq resultsnames
7.0 years ago zeynep.nenseth • 0
2
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4
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4.0k
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DESeq results names when using interaction terms
DESeq deseq2 resultsnames
7.8 years ago akaever ▴ 30
4
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4
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2.0k
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How to handle the change in resultsNames() for DESeq2 ?
deseq2 resultsnames multifactorial design
updated 7.9 years ago by 41k • written 7.9 years ago by ▴ 10
0
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1
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2.9k
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DESeq2 releveling not changing resultsNames options
deseq2 relevel resultsNames multifactorial design
updated 8.2 years ago by 41k • written 8.2 years ago by ▴ 20
11 results • Page 1 of 1
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Comment: Why p value inconsistent when using different number of pathway score? by Chris • 0
Hi Robert, if two conditions don't have hundreds of differential express genes ( in some conditions such as peripheral blood Alzheimer vs n…
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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