Bioconductor Rflowcyt

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flow cytometry flowcore flowclean rflowcyt flowworkspace

updated 8.4 years ago by Jiang, Mike ★ 1.3k • written 8.4 years ago by magomudw • 0

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rflowcyt rflowcyt

updated 16.7 years ago by Byron Ellis ▴ 100 • written 16.7 years ago by M. Jankowski ▴ 160

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Genetics Cancer rflowcyt Genetics Cancer rflowcyt

17.7 years ago Ryan Brinkman ▴ 10

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rflowcyt cycle rflowcyt cycle

17.8 years ago Ulrik Stervbo ▴ 80

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prada rflowcyt prada rflowcyt

17.9 years ago Nolwenn LeMeur ▴ 140

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rflowcyt rflowcyt

17.9 years ago Nolwenn LeMeur ▴ 140

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Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure

updated 17.9 years ago by Seth Falcon ★ 7.4k • written 17.9 years ago by Ulrik Stervbo ▴ 80

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prada rflowcyt prada rflowcyt

updated 17.9 years ago by Nolwenn LeMeur ▴ 140 • written 17.9 years ago by dr. Treszl András ▴ 10

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Biobase rflowcyt Biobase rflowcyt

updated 17.9 years ago by Nolwenn LeMeur ▴ 140 • written 17.9 years ago by Ulrik Stervbo ▴ 80

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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