Biostar Rnaseq analysis

Showing : rnaseq analysis • reset

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2.1k

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rnaseq analysis variancestabilizingtransformation normalization cpm edger

updated 4.7 years ago by Wolfgang Huber 13k • written 4.8 years ago by svlachavas ▴ 800

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2.6k

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deseq2 timecourse multiple factor design RNAseq analysis differential gene expression

updated 5.4 years ago by Gavin Kelly ▴ 660 • written 5.4 years ago by c.nicole ▴ 50

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1.1k

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limma differential gene expression rnaseq analysis alignment RSEM

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by goldberg.jm ▴ 10

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430

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rnaseq analysis

updated 4.1 years ago by James W. MacDonald 62k • written 4.1 years ago by marak • 0

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867

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filterByExpression edgeR RNAseq analysis edger

updated 2.9 years ago by Gordon Smyth 47k • written 2.9 years ago by hcnbox • 0

5 results • Page 1 of 1

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Comment: How to load fasta file with openPrimeR? by mdoering ▴ 10

A FASTA file is a raw text file (not MS Word or the likes), with a specific structure, along the likes of: > \>seq_id_1 \ > ACAGCACA \ > \…

Comment: How to load fasta file with openPrimeR? by Santiago Edilberto • 0

How do I know if my file is properly formatted FASTA file?

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by Hervé Pagès 16k

Got it. Yeah I guess having a `strandMode` parameter for `readGAlignmentsList()` would help handle this. @Robert: Do you want to open an i…

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by James W. MacDonald 62k

One reason to use a GAlignmentsList object is if you have 'too many' unpaired reads for some reason and you want to recover them. And it's …

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair by Hervé Pagès 16k

Hi Robert, Just to clarify, a GAlignmentsList object represents a list of GAlignments objects, in the same way that a GRangesList object r…

Votes

Answer: Is this DESeq2 interactions design correct?

Comment: STRINGdb string_db$map error

Comment: How to normalize long-read RNA-seq data for comparison with short-reads

Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R

C: Can't install TopmedPipeline Package

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Scholar to James W. MacDonald 62k

Teacher to Michael Love 39k