Bioconductor RnaseqGene

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101

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DESeq2 rnaseqGene Normalization

updated 9 days ago by ATpoint ★ 4.1k • written 9 days ago by sajadahmad41454 • 0

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375

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DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation

10 days ago • updated 7 days ago sajadahmad41454 • 0

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305

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rnaseqGene edgeR DEGraph DifferentialExpression

updated 9 weeks ago by Gordon Smyth 50k • written 9 weeks ago by z_bahari • 0

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670

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DESeq2 rnaseqGene RNASeqData limma RNASeq

updated 10 weeks ago by Michael Love 42k • written 12 weeks ago by sap275 ▴ 10

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234

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DESeq2 rnaseqGene DifferentialExpression

updated 3 months ago by Michael Love 42k • written 3 months ago by Abhishek Singh ▴ 20

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599

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DifferentialExpression rnaseqGene RNASeqData

3 months ago Shaimaa Gamal • 0

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585

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rnaseqGene Bioconductor3.18 DifferentialExpression release

updated 6 months ago by Michael Love 42k • written 6 months ago by Nadine ▴ 60

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839

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rnaseqGene

updated 10 months ago by Michael Love 42k • written 10 months ago by ikpa_p123 • 0

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839

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rnaseqGene DESeq2 Transcriptomics

2.6 years ago • updated 12 months ago diangomaiga • 0

9 results • Page 1 of 1

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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