Bioconductor Rnaseq

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limma limma voom rnaseq_analysis DEG

7.7 years ago • updated 6.7 years ago SPbeginner • 0

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rnaseq_analysis KEGG nonmodel species

updated 7.2 years ago by James W. MacDonald 68k • written 7.2 years ago by laural710 • 0

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sequencing rnaseq_analysis

7.8 years ago alemutak • 0

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rnaseq_analysis

8.5 years ago fakhter1 • 0

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rnaseq_analysis

updated 9.2 years ago by Gordon Smyth 53k • written 9.2 years ago by kjo ▴ 70

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deseq2 rnaseq_analysis variancestabilizingtransformation confounders

updated 9.5 years ago by Michael Love 43k • written 9.5 years ago by ompandey ▴ 10

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limma RNAseq_Analysis model.matrix

updated 10.5 years ago by Aaron Lun ★ 29k • written 10.5 years ago by anver • 0

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Comment: Bioconductor 3.22 Release Schedule by loganlstevens • 0

This release reminds me of the strategies in [solitaired](https://solitaired.io) to overcome live solitaires.

Answer: Create consensusMatrix for codon bases by Kevin Blighe ★ 4.0k

To address your query on generating a codon frequency matrix analogous to the output from `consensusMatrix` for a `DNAStringSet` object, no…

Answer: Finding duplicated entries in GRangesList by Kevin Blighe ★ 4.0k

The duplicated and unique functions operate element-wise on GRangesList objects. This means that they apply the respective function to each…

Answer: sigDF object in sesame by Kevin Blighe ★ 4.0k

Your interpretation of the column headers in the SigDF object is correct: MG corresponds to the methylated signal intensity in the green ch…

Answer: DESeq2 on non-RNASeq counts data by Kevin Blighe ★ 4.0k

The use of DESeq2 for count data from artificial sequences is acceptable, as the program models counts via a negative binomial distribution…

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Answer: Post translational modifications and phosphoproteomics in limpa?

Answer: Identifying differentially expressed genes in individual samples from a large co

Bioconductor Seminar Series - Dec 2: Deep-learning Gene Perturbation Effect Prediction

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Scholar to Gordon Smyth 53k