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rnaseq_analysis
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limma - Multi-level Experiments - time course data
limma
limma voom
rnaseq_analysis
DEG
7.9 years ago • updated 6.9 years ago
SPbeginner
• 0
1
vote
3
replies
1.9k
views
Ortholog conversions of non-model organisms not present in Biomart, ensembl or KEGG
rnaseq_analysis
KEGG
nonmodel species
updated 7.4 years ago by
James W. MacDonald
68k • written 7.4 years ago by
laural710
• 0
0
votes
0
replies
1.3k
views
Sequence composition effect
sequencing
rnaseq_analysis
8.0 years ago
alemutak
• 0
1
vote
3
replies
2.1k
views
RNASeq data analysis with bio replicates
rnaseq_analysis
8.7 years ago
fakhter1
• 0
1
vote
1
reply
1.4k
views
How to simulate count data to test rnaseq analysis code?
rnaseq_analysis
updated 9.4 years ago by
Gordon Smyth
53k • written 9.4 years ago by
kjo
▴ 70
4
votes
3
replies
5.5k
views
How to do a confounding variable adjustment without using the treatment information?
deseq2
rnaseq_analysis
variancestabilizingtransformation
confounders
updated 9.7 years ago by
Michael Love
43k • written 9.7 years ago by
ompandey
▴ 10
1
vote
2
replies
2.3k
views
Limma model fitting: including and excluding replicates in the model gives different results in RNAseq Analysis
limma
RNAseq_Analysis
model.matrix
updated 10.7 years ago by
Aaron Lun
★ 29k • written 10.7 years ago by
anver
• 0
7 results • Page
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Comment: Error message that there is no package called Biobase
by
DamionLedner99
• 0
thanks for sharing!!! https://cran.r-project.org/
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Votes
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
A: DESeq2 normalization vs VST vs rlog
Answer: How to directly decet the outlier samples (libraries) in EdgeR pipeline
Answer: Confused about the CPM and TMM normalization in edgeR
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James Aiden
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