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rnaseq_analysis
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limma - Multi-level Experiments - time course data
limma
limma voom
rnaseq_analysis
DEG
6.1 years ago • updated 5.2 years ago
SPbeginner
• 0
1
vote
3
replies
1.3k
views
Ortholog conversions of non-model organisms not present in Biomart, ensembl or KEGG
rnaseq_analysis
KEGG
nonmodel species
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
laural710
• 0
0
votes
0
replies
923
views
Sequence composition effect
sequencing
rnaseq_analysis
6.3 years ago
alemutak
• 0
1
vote
3
replies
1.4k
views
RNASeq data analysis with bio replicates
rnaseq_analysis
6.9 years ago
fakhter1
• 0
1
vote
1
reply
1.1k
views
How to simulate count data to test rnaseq analysis code?
rnaseq_analysis
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
kjo
▴ 70
3
votes
3
replies
4.3k
views
How to do a confounding variable adjustment without using the treatment information?
deseq2
rnaseq_analysis
variancestabilizingtransformation
confounders
updated 8.0 years ago by
Michael Love
42k • written 8.0 years ago by
ompandey
▴ 10
1
vote
2
replies
1.8k
views
Limma model fitting: including and excluding replicates in the model gives different results in RNAseq Analysis
limma
RNAseq_Analysis
model.matrix
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
anver
• 0
7 results • Page
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Comment: EGSEA usage with microarray data (with vooma)?
by
Chris
• 0
Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
> Any suggestions for methylation data segmentation? I think the same segmentation can be used.
Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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DevelopingHippo
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