Showing : rnaseqpower • reset
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
updated 6.5 years ago by ▴ 20 • written 6.5 years ago by • 0
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3
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How to calculate coefficient of variation within group?
edgeR limma RNASeqPower
updated 5 months ago by 46k • written 17 months ago by ▴ 50
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Power Calculation of multiple factors design of RNA-sequencing study
edgeR DESeq RNASeqPower edgeR DESeq RNASeqPower
8.5 years ago Guest User ★ 12k
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Depth or # of reads for RNASeqPower
rnaseqpower
7.8 years ago drnknmstrr • 0
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Typo in citation for RNASeqPower
RNASeqPower citation
7 weeks ago stephenjjohnson • 0
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Comment: DEXseq error unable to find an inherited method for function NSBS for signature by ta_awwad ▴ 10
Hi there, did you manage to solve this problem? thanks TA
Comment: Error in Create switchAnalyzeRlist by k.vitting.seerup ▴ 120
I just double checked and the fasta files found [here][1] should work. Please also take a look at [this][2] if you want to use Ensembl. …
Answer: Correlation between two different datasets: between results of RNAseq and absenc by Michael Love 37k
Re: LFC, if you are working with this and then downstream analysis, I'd recommend `lfcShrink` if you aren't already using this. It will shr…
Answer: Strange Dispersion plot by Michael Love 37k
This indeed looks strange, I would immediately suspect some weird batch effects. Try all kinds of diagnostic plots like, boxplot, PCA, corr…
Answer: Correlation between CpG methylation and gene expression from DESeq2-> Normalizat by Michael Love 37k
In this case, can you say why you want to normalize for gene length? In our tximport/tximeta pipeline, it would correct for differential ge…
Votes
Answer: Error in Create switchAnalyzeRlist
Answer: Error in Create switchAnalyzeRlist
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
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Popular Question to ta_awwad ▴ 10
Scholar to k.vitting.seerup ▴ 120
Scholar to James W. MacDonald 60k
Popular Question to Matthew Ritchie ▴ 1000
Scholar to Thomas Carroll ▴ 410
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