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rory stark
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Diffbind heatmap color change
diffbind
rory stark
6.8 years ago
andrew.gehrke
• 0
0
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2
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1.2k
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Diffbind analysis warning
rory stark
7.4 years ago • updated 6.9 years ago
mforoo1
• 0
1
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7
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2.7k
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loading dba.plotVolcano in DiffBind
diffbind
chipseq
atac-seq
rory stark
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
andrew.gehrke
• 0
1
vote
8
replies
1.3k
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Diffbind multiple blocking factor
diffbind
rory stark
chip seq
updated 3.5 years ago by
Rory Stark
★ 5.2k • written 4.0 years ago by
bioinfouser2
▴ 10
1
vote
2
replies
842
views
The coordinate system problem about DiffBind output
diffbind
Rory Stark
coordinate
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.2 years ago by
Guandong Shang
▴ 40
0
votes
7
replies
1.9k
views
CHIPQC error regarding BiocParallel
CHIPQC
Diffbind
chipseq
rory stark
Thomas Carroll
updated 21 months ago by
arisarkar88
▴ 40 • written 4.1 years ago by
bioinfouser2
▴ 10
0
votes
1
reply
1.9k
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DiffBind TMM normalization
Rory Stark
diffbind
TMM
edgeR
chipseq
updated 7.8 years ago by
Rory Stark
★ 5.2k • written 8.0 years ago by
akdess
• 0
7 results • Page
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Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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